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This is a table of all the discrepancies between .attic/cell_counts.json and make report.
Accession ID
.attic/cell_counts.json
make report
GSE44183
48
47
GSE75659
1318
1316
GSE99795
147
0
@hannes-ucsc Also, GSE95435 has counts in .attic/cell_counts.json but has no spreadsheet associated with it in this repo. GSE95435 only appears in the geo_series_accessions field of spreadsheets/existing/GSE114374_project.json
The off-by-ones are fixed in #142. I looked at the geo files in GSE99795 and hesitate to agree with @DailyDreaming's call to count transcripts as cells. We'll stick with our call not to consider that project's matrix. That leaves GSE95435 to resolve.
Lon's old method vs current method.
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