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Decide what to do with the GEO projects that have an HCA matrix #121

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hannes-ucsc opened this issue Jan 17, 2020 · 1 comment

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hannes-ucsc commented Jan 17, 2020

The text was updated successfully, but these errors were encountered:

hannes-ucsc added a commit that referenced this issue


          Reenable conversion csv-per-cell matrix project

#121

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DailyDreaming commented Jan 26, 2020

Just one project example that I looked at:

prod says 30,000 cells:
https://ux-dev.data.humancellatlas.org/explore/projects?filter=%5B%7B%22facetName%22%3A%22projectTitle%22%2C%22terms%22%3A%5B%22Dissecting+the+human+liver+cellular+landscape+by+single+cell+RNA-seq+reveals+novel+intrahepatic+monocyte%2F+macrophage+populations%22%5D%7D%5D

ux-dev says "unspecified":
https://ux-dev.data.humancellatlas.org/explore/projects?filter=%5B%7B%22facetName%22%3A%22projectTitle%22%2C%22terms%22%3A%5B%22Dissecting+the+human+liver+cellular+landscape+by+single+cell+RNA-seq+reveals+novel+intrahepatic+monocyte%2F+macrophage+populations%22%5D%7D%5D

Both the matrix file in prod and in ux-dev contain 8444 cells:
https://data.humancellatlas.org/explore/projects/4d6f6c96-2a83-43d8-8fe1-0f53bffd4674/expression-matrices
https://ux-dev.data.humancellatlas.org/explore/projects/bdfe2399-b8a6-5b6a-9f0a-a5fd81d08ff4/expression-matrices

Though one matrix file maps across about 20k genes and the other across about 60k genes.

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