Cell state co-occurrence analysis

[ConDem94]

Hi,

Thank you for this amazing package. Is it possible to analyse the co-occurrence of variable cell states across cell types using the state theta values? Similar to various ecotype papers where they used CIBERSORTx for deconvolution and then correlation analysis, I was wondering if this is possible here.

Best wishes,
Constantinos

[tinyi]

Hi Constantinos, Thank you for your interest in our method. Yes. The cell type fraction inferred by BayesPrism should be automatically compatible with all downstream analyses involving cell type fractions. Best, Tinyi

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On Mon, Aug 26, 2024 at 4:48 PM ConDem94 ***@***.***> wrote: Hi, Thank you for this amazing package. Is it possible to analyse the co-occurrence of variable cell states across cell types using the state theta values? Similar to various ecotype papers where they used CIBERSORTx for deconvolution and then correlation analysis, I was wondering if this is possible here. Best wishes, Constantinos — Reply to this email directly, view it on GitHub <#99>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB4NHSYHFQGRXHN3FKSMCULZTOIDJAVCNFSM6AAAAABNEYF2VGVHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ4DONZVGQ3TQNQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>