Update updates page for dcp 44

[NoopDog]

Update.. use the text for dcp44 from this doc here.
https://docs.google.com/document/d/15Gztld0Y17OnORnSLA8URGiy5xtPU2LYZgJfF_9-RLA/edit?tab=t.0

New projects (3):

1. Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions
2. Defining cellular complexity in human autosomal dominant polycystic kidney disease by multimodal single cell analysis
3. Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy

Updated projects (3):

1. A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
2. A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells.
3. Asian Immune Diversity Atlas (AIDA): Single-cell analysis of human diversity in circulating immune cells (Japan cells)

Projects with updated metadata (137):

1. A Human Liver Cell Atlas reveals Heterogeneity and Epithelial Progenitors
2. A Protocol for Revealing Oral Neutrophil Heterogeneity by Single-Cell Immune Profiling in Human Saliva
3. A Single-Cell Transcriptome Atlas of the Human Pancreas.
4. A Single-Cell Transcriptomic Atlas of Human Skin Aging.
5. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
6. A human breast atlas integrating single-cell proteomics and transcriptomics
7. A human cell atlas of the pressure-induced hypertrophic heart
8. A human embryonic limb cell atlas resolved in space and time
9. A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
10. A molecular cell atlas of the human lung from single-cell RNA sequencing
11. A proximal-to-distal survey of healthy adult human small intestine and colon epithelium by single-cell transcriptomics
12. A single-cell atlas of human teeth
13. A single-cell regulatory map of postnatal lung alveologenesis in humans and mice
14. A single-cell transcriptome atlas of the adult human retina
15. A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
16. A transcriptional cross species map of pancreatic islet cells.
17. Activation of CD8+ T Cells in Chronic Obstructive Pulmonary Disease Lung
18. An Atlas of Cells in the Human Tonsil
19. Anatomically distinct fibroblast subsets determine skin autoimmune patterns.
20. Anomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic Obstructive Pulmonary Disease
21. Assessing Cellular and Transcriptional Diversity of Ileal Mucosa Among Treatment-Naïve and Treated Crohn’s Disease
22. COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.
23. COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis.
24. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.
25. Cardiac cell type-specific gene regulatory programs and disease risk association
26. Cell Atlas of The Human Fovea and Peripheral Retina
27. Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
28. Cell type-specific and disease-associated eQTL in the human lung
29. Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids
30. Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia.
31. Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis
32. Colonic single epithelial cell census reveals goblet cell drivers of barrier breakdown in inflammatory bowel disease.
33. Combinatorial transcription factor profiles predict mature and functional human islet α and β cells
34. Comprehensive cell atlas of the first-trimester developing human brain
35. Defining Transcriptional Signatures of Human Hair Follicle Cell States
36. Defining cardiac functional recovery in end-stage heart failure at single-cell resolution.
37. Defining human mesenchymal and epithelial heterogeneity in response to oral inflammatory disease
38. Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts
39. Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps
40. Distinct fibroblast progenitor subpopulation expedites regenerative mucosal healing by immunomodulation
41. Generation of human islet cell type-specific identity genesets.
42. Genetic ancestry effects on the response to viral infection are pervasive but cell type specific
43. Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses
44. High-Resolution Transcriptomic Landscape of the Human Submandibular Gland.
45. Human distal airways contain a multipotent secretory cell that can regenerate alveoli
46. Human distal lung maps and lineage hierarchies reveal a bipotent progenitor
47. Human melanocyte development and melanoma dedifferentiation at single-cell resolution
48. Human oral mucosa cell atlas reveals a stromal-neutrophil axis regulating tissue immunity
49. Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-19
50. Identification of neural oscillations and epileptiform changes in human brain organoids.
51. Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer
52. Immune signatures underlying post-acute COVID-19 lung sequelae
53. Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
54. Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19
55. Integrated analysis of multimodal single-cell data
56. Integrated multiomic characterization of congenital heart disease
57. Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
58. Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
59. Lineage recording in human cerebral organoids.
60. Local and systemic responses to SARS-CoV-2 infection in children and adults
61. Lung transplantation for patients with severe COVID-19
62. Mapping the developing human immune system across organs
63. Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing
64. Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer
65. Myofibroblast transcriptome indicates SFRP2hi fibroblast progenitors in systemic sclerosis skin
66. Neuronal defects in a human cellular model of 22q11.2 deletion syndrome.
67. Phenotype molding of stromal cells in the lung tumor microenvironment
68. Pseudotime Ordering of Single Human β-Cells Reveals States of Insulin Production and Unfolded Protein Response.
69. RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes
70. Recruited macrophages elicit atrial fibrillation
71. Regenerative lineages and immune-mediated pruning in lung cancer metastasis
72. Resolving the intertwining of inflammation and fibrosis in human heart failure at single-cell level
73. SARS-CoV-2 infection of the oral cavity and saliva.
74. SARS‐CoV‐2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells
75. Salivary ZG16B expression loss follows exocrine gland dysfunction related to oral chronic graft-versus-host disease.
76. Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor.
77. Single Nucleus RNA-sequencing Reveals Altered Intercellular Communication and Dendritic Cell Activation in Nonobstructive Hypertrophic Cardiomyopathy
78. Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
79. Single cell and lineage tracing studies reveal the impact of CD34+ cells on myocardial fibrosis during heart failure
80. Single cell profiling of COVID-19 patients: an international data resource from multiple tissues
81. Single cell transcriptional zonation of human psoriasis skin identifies an alternative immunoregulatory axis conducted by skin resident cells
82. Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker.
83. Single cell transcriptomics of human epidermis identifies basal stem cell transition states.
84. Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
85. Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key β-Cell-Specific Disease Genes
86. Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors
87. Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes
88. Single-Cell Transcriptomic Profiling of Human Dental Pulp in Sound and Carious Teeth: A Pilot Study
89. Single-Cell Transcriptomics Reveal Immune Mechanisms of the Onset and Progression of IgA Nephropathy
90. Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response
91. Single-Cell Transcriptomics of the Human Endocrine Pancreas
92. Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs
93. Single-cell RNA sequencing of human kidney
94. Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma
95. Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response
96. Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics
97. Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification
98. Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease
99. Single-cell analysis reveals innate lymphoid cell lineage infidelity in atopic dermatitis
100. Single-cell atlas of bronchoalveolar lavage from preschool cystic fibrosis reveals new cell phenotypes
101. Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease
102. Single-cell genomics improves the discovery of risk variants and genes of atrial fibrillation
103. Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
104. Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes.
105. Single-cell multi-omics analysis of the immune response in COVID-19
106. Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
107. Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity
108. Single-cell protein activity analysis identifies recurrence-associated renal tumor macrophages.
109. Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy.
110. Single-cell sequencing unveils distinct immune microenvironments with CCR6-CCL20 crosstalk in human chronic pancreatitis
111. Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.
112. Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes
113. Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming
114. Single-cell transcriptomic analysis of gingivo-buccal oral cancer reveals two dominant cellular programs
115. Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
116. Single-cell transcriptomics combined with interstitial fluid proteomics defines cell type-specific immune regulation in atopic dermatitis.
117. Single-cell transcriptomics of East-Asian pancreatic islets cells
118. Single-cell transcriptomics provides insights into hypertrophic cardiomyopathy
119. Single-cell transcriptomics reveals cell-type-specific diversification in human heart failure
120. Single-cell transcriptomics reveals distinct effector profiles of infiltrating T cells in lupus skin and kidney
121. Single-nucleus RNA sequencing in ischemic cardiomyopathy reveals common transcriptional profile underlying end-stage heart failure.
122. Single-nucleus RNA sequencing of human pancreatic islets identifies novel gene sets and distinguishes β-cell subpopulations with dynamic transcriptome profiles.
123. Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.
124. Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy
125. Spatial multi-omic map of human myocardial infarction
126. Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
127. Spatially resolved multiomics of human cardiac niches
128. Targeting the Immune-Fibrosis Axis in Myocardial Infarction and Heart Failure
129. The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
130. The ZIP8/SIRT1 axis regulates alveolar progenitor cell renewal in aging and idiopathic pulmonary fibrosis
131. The landscape of immune dysregulation in Crohn's disease revealed through single-cell transcriptomic profiling in the ileum and colon
132. The serine proteases dipeptidyl-peptidase 4 and urokinase are key molecules in human and mouse scar formation
133. Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19.
134. Transcriptional and Cellular Diversity of the Human Heart
135. Transcriptional changes in the mammary gland during lactation revealed by single cell sequencing of cells from human milk
136. Transcriptomic Mapping of Human Parotid Gland at Single-Cell Resolution
137. scRNA-Seq Reveals New Enteric Nervous System Roles for GDNF, NRTN, and TBX3

[jpaten]

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