diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000..0c7009f Binary files /dev/null and b/.DS_Store differ diff --git a/R/plotDR.R b/R/plotDR.R index 2e178ea..db0dbaa 100644 --- a/R/plotDR.R +++ b/R/plotDR.R @@ -329,8 +329,8 @@ pdataMDS_intl <- function(mdsdata, dims) { lambda <- pmax(mdsdata$eigen.values, 0) plotdf <- data.frame( "RestoolsMtchID" = rownames(mdsdata$distance.matrix.squared), - x = mdsdata$eigen.vectors[, dims[1]] * lambda[dims[1]], - y = mdsdata$eigen.vectors[, dims[2]] * lambda[dims[2]] + x = mdsdata$eigen.vectors[, dims[1]] * sqrt(lambda[dims[1]]), + y = mdsdata$eigen.vectors[, dims[2]] * sqrt(lambda[dims[2]]) ) pca_labs <- paste0("Leading logFC dim ", seq(ncol(mdsdata$eigen.vectors))) pca_labs <- paste0(pca_labs, " (", round(mdsdata$var.explained * 100, digits = 2), "%)")