From 12a95d0aab9900e18b44c6c65acc19ac036adfb4 Mon Sep 17 00:00:00 2001
From: arwa-ebi <aibrahim@ebi.ac.uk>
Date: Thu, 14 Sep 2023 10:48:11 +0100
Subject: [PATCH] obsoleted term 'red blood cell distribution width'

---
 src/ontology/efo-edit.owl              | 10 +++++++---
 src/ontology/reports/obsolete_gwas.tsv |  1 +
 src/ontology/reports/obsoletes.tsv     |  3 +++
 3 files changed, 11 insertions(+), 3 deletions(-)

diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl
index a2c68af1..929353c3 100644
--- a/src/ontology/efo-edit.owl
+++ b/src/ontology/efo-edit.owl
@@ -28915,7 +28915,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in")
 
 AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part")
 
-# Object Property: obo:RO_0002160 (only_in_taxon)
+# Object Property: obo:RO_0002160 (only in taxon)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T")
 AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160")
@@ -125416,14 +125416,18 @@ AnnotationAssertion(rdfs:label efo:EFO_0005191 "waist height ratio")
 SubClassOf(efo:EFO_0005191 efo:EFO_0004324)
 SubClassOf(efo:EFO_0005191 efo:EFO_0007861)
 
-# Class: efo:EFO_0005192 (red blood cell distribution width)
+# Class: efo:EFO_0005192 (obsolete_red blood cell distribution width)
 
 AnnotationAssertion(obo:IAO_0000115 efo:EFO_0005192 "measure of the variation of red blood cell (RBC) volume")
 AnnotationAssertion(obo:IAO_0000117 efo:EFO_0005192 "Dani Welter")
+AnnotationAssertion(obo:IAO_0100001 efo:EFO_0005192 "http://www.ebi.ac.uk/efo/EFO_0009188")
 AnnotationAssertion(efo:definition_citation efo:EFO_0005192 "erthrocyte distribution width")
 AnnotationAssertion(efo:definition_citation efo:EFO_0005192 "https://en.wikipedia.org/wiki/Red_blood_cell_distribution_width")
+AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0005192 "3.58.0")
+AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0005192 "Duplication")
 AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0005192 "RDW")
-AnnotationAssertion(rdfs:label efo:EFO_0005192 "red blood cell distribution width")
+AnnotationAssertion(rdfs:label efo:EFO_0005192 "obsolete_red blood cell distribution width")
+AnnotationAssertion(owl:deprecated efo:EFO_0005192 "true"^^xsd:boolean)
 SubClassOf(efo:EFO_0005192 efo:EFO_0004503)
 SubClassOf(efo:EFO_0005192 ObjectUnionOf(ObjectSomeValuesFrom(obo:IAO_0000136 obo:MP_0001914) ObjectSomeValuesFrom(obo:IAO_0000136 efo:EFO_0000734) ObjectSomeValuesFrom(obo:IAO_0000136 efo:EFO_0004272)))
 
diff --git a/src/ontology/reports/obsolete_gwas.tsv b/src/ontology/reports/obsolete_gwas.tsv
index 268c9f62..460d1e72 100644
--- a/src/ontology/reports/obsolete_gwas.tsv
+++ b/src/ontology/reports/obsolete_gwas.tsv
@@ -6,6 +6,7 @@
 <http://www.ebi.ac.uk/efo/EFO_0000516>	"http://purl.obolibrary.org/obo/MONDO_0005041"	
 <http://www.ebi.ac.uk/efo/EFO_0002690>	"http://purl.obolibrary.org/obo/MONDO_0007915"	
 <http://www.ebi.ac.uk/efo/EFO_0004215>	"http://purl.obolibrary.org/obo/MONDO_0005351"	
+<http://www.ebi.ac.uk/efo/EFO_0005192>	"http://www.ebi.ac.uk/efo/EFO_0009188"	
 <http://www.ebi.ac.uk/efo/EFO_0005842>	"http://purl.obolibrary.org/obo/MONDO_0005575"	
 <http://www.ebi.ac.uk/efo/EFO_1000882>	"http://purl.obolibrary.org/obo/MONDO_0006715"	
 <http://www.ebi.ac.uk/efo/EFO_1001457>	"http://purl.obolibrary.org/obo/MONDO_0002039"	
diff --git a/src/ontology/reports/obsoletes.tsv b/src/ontology/reports/obsoletes.tsv
index 050c00c6..b28d1679 100644
--- a/src/ontology/reports/obsoletes.tsv
+++ b/src/ontology/reports/obsoletes.tsv
@@ -98,6 +98,7 @@
 <http://purl.obolibrary.org/obo/MONDO_0007348>		
 <http://purl.obolibrary.org/obo/MONDO_0007494>	"MONDO:0100352"	
 <http://purl.obolibrary.org/obo/MONDO_0007761>		
+<http://purl.obolibrary.org/obo/MONDO_0007779>		"MONDO:0800025"
 <http://purl.obolibrary.org/obo/MONDO_0007780>	"MONDO:0800025"	
 <http://purl.obolibrary.org/obo/MONDO_0007798>		"MONDO:0600009"
 <http://purl.obolibrary.org/obo/MONDO_0007798>		"MONDO:0600010"
@@ -144,6 +145,7 @@
 <http://purl.obolibrary.org/obo/MONDO_0010994>		
 <http://purl.obolibrary.org/obo/MONDO_0011108>	"MONDO:0800043"	
 <http://purl.obolibrary.org/obo/MONDO_0011127>	"MONDO:0100344"	
+<http://purl.obolibrary.org/obo/MONDO_0011380>	"MONDO:0800448"	
 <http://purl.obolibrary.org/obo/MONDO_0011707>	"MONDO:0800028"	
 <http://purl.obolibrary.org/obo/MONDO_0011905>	"MONDO:0031446"	
 <http://purl.obolibrary.org/obo/MONDO_0012017>	"MONDO:0020783"	
@@ -1664,6 +1666,7 @@
 <http://www.ebi.ac.uk/efo/EFO_0005103>	"http://purl.obolibrary.org/obo/UBERON_6001767"	
 <http://www.ebi.ac.uk/efo/EFO_0005104>	"http://purl.obolibrary.org/obo/FBbt_00001768"	
 <http://www.ebi.ac.uk/efo/EFO_0005107>	"http://purl.obolibrary.org/obo/PO_0025022"	
+<http://www.ebi.ac.uk/efo/EFO_0005192>	"http://www.ebi.ac.uk/efo/EFO_0009188"	
 <http://www.ebi.ac.uk/efo/EFO_0005295>	"http://purl.obolibrary.org/obo/MONDO_0005475"	
 <http://www.ebi.ac.uk/efo/EFO_0005296>	"http://purl.obolibrary.org/obo/MONDO_0100431"	
 <http://www.ebi.ac.uk/efo/EFO_0005459>	"http://www.ebi.ac.uk/efo/EFO_0002338"