From a0d7e32f05e3bf040c8e086f32be5d06af8aad64 Mon Sep 17 00:00:00 2001 From: Zoe May Pendlington Date: Thu, 8 Aug 2024 09:53:41 +0100 Subject: [PATCH] Added RNA assay term for #2219 --- src/ontology/efo-edit.owl | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index c7274da5..80f75ec0 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -17222,6 +17222,7 @@ Declaration(Class(efo:EFO_0022835)) Declaration(Class(efo:EFO_0022836)) Declaration(Class(efo:EFO_0022837)) Declaration(Class(efo:EFO_0022838)) +Declaration(Class(efo:EFO_0022839)) Declaration(Class(efo:EFO_0030000)) Declaration(Class(efo:EFO_0030001)) Declaration(Class(efo:EFO_0030002)) @@ -207538,6 +207539,16 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022838 "Human Umbilical co AnnotationAssertion(rdfs:label efo:EFO_0022838 "HUDEP-2"@en) SubClassOf(efo:EFO_0022838 efo:EFO_0005740) +# Class: efo:EFO_0022839 (STORM-seq) + +AnnotationAssertion(Annotation(efo:definition_citation "https://doi.org/10.1101/2022.03.14.484332") obo:IAO_0000115 efo:EFO_0022839 "Single-cell TOtal RNA Miniaturized sequencing. A full-length single-cell ribo-reduced RNA sequencing protocol, optimized to profile thousands of cells per run. STORM-seq is built upon the Takara SMART-seq Stranded kit, allowing use of off-the-shelf reagents and standard equipment.") +AnnotationAssertion(obo:IAO_0000117 efo:EFO_0022839 "https://orcid.org/0000-0003-1653-8449") +AnnotationAssertion(dc:creator efo:EFO_0022839 "Zoe May Pendlington") +AnnotationAssertion(dc:date efo:EFO_0022839 "2024-08-08T08:50:51Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label efo:EFO_0022839 "STORM-seq"@en) +SubClassOf(efo:EFO_0022839 efo:EFO_0001457) +SubClassOf(efo:EFO_0022839 efo:EFO_0010184) + # Class: efo:EFO_0030000 (STARmap) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29930089") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0002-3090-9894") obo:IAO_0000115 efo:EFO_0030000 "STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.")