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ReferenceBases:
description: | Reference bases for this variant (starting from `start`). Accepted values: [ACGTN]*. N is a wildcard, that denotes the position of any base, and can be used as a standalone base of any type or within a partially known sequence. For example a sequence where the first and last bases are known, but the middle portion can exhibit countless variations of [ACGT], or the bases are unknown: ANNT the Ns can take take any form of [ACGT], which makes both ACCT and ATGT (or any other combination) viable sequences.type: stringpattern: '^([ACGTN]+)$'AlternateBases:
description: | The bases that appear instead of the reference bases. Accepted values: [ACGTN]*. N is a wildcard, that denotes the position of any base, and can be used as a standalone base of any type or within a partially known sequence. For example a sequence where the first and last bases are known, but the middle portion can exhibit countless variations of [ACGT], or the bases are unknown: ANNT the Ns can take take any form of [ACGT], which makes both ACCT and ATGT (or any other combination) viable sequences. Categorical variant queries, e.g. such *not* being represented through sequence & position, make use of the `variantType` parameter. Optional: either `alternateBases` or `variantType` is required.type: stringpattern: '^([ACGTN]+)$'
Implement this usage of N as a wildcard for [ACGT] in both referenceBases and alternateBases parameters.
The text was updated successfully, but these errors were encountered:
In the spec (see here), we can read:
Implement this usage of
N
as a wildcard for[ACGT]
in bothreferenceBases
andalternateBases
parameters.The text was updated successfully, but these errors were encountered: