diff --git a/README.md b/README.md index 8348b3f..b7fa765 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,6 @@ csv_folder='csv/examples/' output_docs_folder='output_docs/CINECA_dataset/' #### VCF Conversion config parameters #### -num_variants=100000 reference_genome='GRCh37' # Choose one between NCBI36, GRCh37, GRCh38 ``` @@ -62,7 +61,7 @@ First option will delete "_id" entries generated by mongoDB: ```bash docker exec ri-tools-mongo mongoexport --jsonArray --uri "mongodb://root:example@127.0.0.1:27017/beacon?authSource=admin" --collection genomicVariations | sed '/"_id":/s/"_id":[^,]*,//g' > genomicVariations.json ``` -The second one will keep the "_id" entries generated by mongoDB: +The second option, our **recommended one**, will keep the "_id" entries generated by mongoDB: ```bash docker exec ri-tools-mongo mongoexport --jsonArray --uri "mongodb://root:example@127.0.0.1:27017/beacon?authSource=admin" --collection genomicVariations > genomicVariations.json ```