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local interaction improvement #304

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elenapapaleo opened this issue Dec 5, 2024 · 0 comments
Open

local interaction improvement #304

elenapapaleo opened this issue Dec 5, 2024 · 0 comments
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enhancement New feature or request

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we now annotate as uncertain cases where the mutation site is with SASA > 20% because we do not know if they can potentially interact with a interface or interactor for which we have no structural coverage. This might still retain some partially buried sites where another protein cannot get in (an example N363 in POLE). Thus an idea for improvement of this annotation is to modify the decision tree so that we include the data from fpocket and both SASA > 20% and belonging to a pocket should be criteria satisfied to go in the uncertain class, the other could be reverted to neutral as the cases of buried residues.

@elenapapaleo elenapapaleo added the enhancement New feature or request label Dec 5, 2024
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