pyproject.toml

# https://python-poetry.org/docs/pyproject
# minimal required information

[project]
name = "dbdicom"
version = "0.2.2"
dependencies = [ 
    "matplotlib",
    "nibabel",
    "numpy",
    "pandas",
    "pydicom", 
    "python-gdcm",
    "pylibjpeg-libjpeg",
    "importlib-resources", #necessary?
]

# optional information

description = "A pythonic interface for reading and writing DICOM databases"
readme = "README.md"
authors = [
  { name = "Steven Sourbron", email = "s.sourbron@sheffield.ac.uk" },
  { name = "Ebony Gunwhy", email = "e.gunwhy@sheffield.ac.uk" }, 
  ]
license = { file = "LICENSE" }
classifiers = [
  # How mature is this project? Common values are
  #   3 - Alpha
  #   4 - Beta
  #   5 - Production/Stable
  'Development Status :: 3 - Alpha',

  # Indicate who your project is intended for
  'Intended Audience :: Developers',
  'Intended Audience :: Science/Research',
  'Topic :: Scientific/Engineering',
  'Environment :: Console',
  'Operating System :: OS Independent',

  'License :: OSI Approved :: Apache Software License',
  "Programming Language :: Python",
  "Programming Language :: Python :: 3"
]
keywords = ['python', "medical imaging", "DICOM"]

requires-python = ">=3.6"

[project.urls]
"Homepage" = "https://qib-sheffield.github.io/dbdicom/"

[tool.setuptools.packages.find]
where = ["src"]

[project.optional-dependencies]
docs = [
    "sphinx",
    "pydata-sphinx-theme",
    "myst-parser", 
    "sphinx-copybutton",
    "sphinx-design",
    "sphinx-remove-toctrees",
    "autodocsumm",
    "docutils",
    "sphinxcontrib-applehelp",
    "sphinxcontrib-devhelp",
    "sphinxcontrib-htmlhelp",
    "sphinxcontrib-jsmath",
    "sphinxcontrib-qthelp",
    "sphinxcontrib-serializinghtml",
]
wrappers = [
    "scipy",
    # restricting to the latest stable release for now due to a bug
    # introduced in 0.20.0 that causes executables to crash. The bug is known
    # and a fix will presumably be included in upcoming releases
    # in which case this restriction can be removed.
    # https://github.com/scikit-image/scikit-image/issues/6784
    # https://github.com/scientific-python/lazy_loader/pull/39
    # Note on pyton 3.11 scikit image must be installed as
    # pip install --pre scikit-image<=0.19.0 
    # until a new version is released (0.21.0)
    "scikit-image<=0.19.0", 
    #"SimpleITK", "itk-elastix",
    "SimpleITK-SimpleElastix",
    "dipy",
    "scikit-learn",
]