Configuration file to run nf-core pipelines on the cluster of the Interfaculty Bioinformatics Unit of the University of Bern.
To use, run the pipeline with -profile unibe_ibu. This will download and launch the profile.config which has been pre-configured with a setup suitable for the IBU cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. This requires a local installation of singularity. It is easiest to submit the pipeline from a compute node. Once the image is cached, you can also submit from the login node.