push-biomart.yml

name: Build biomart

on:
  workflow_dispatch

#When updating images change image tag below to correspond to changes
env:
  IMAGE_NAME: biomart_perl
  IMAGE_TAG: r-4.3.1_perl-5.38.2 

jobs:
  build:
    name: Build
    #Using ubuntu-22.04 instead of ubuntu-latest to use Docker 24 instead of Docker 25 as it causes gitpod issues
    runs-on: ubuntu-22.04

    steps:
    - name: Clean workspace before start
      run: rm -rf $GITHUB_WORKSPACE/*

    - uses: actions/checkout@v4.1.1

    - name: Check Docker version
      run: docker --version

    - name: Build image
      id: build-image
      run: docker build -t ${IMAGE_NAME}:${IMAGE_TAG} -f ${IMAGE_NAME}/Dockerfile . 

    - name: Quay.io login
      run: docker login -u ${{ secrets.DOCKERBUILD_ROBOT_USERNAME }} --password-stdin <<< ${{ secrets.DOCKERBUILD_ROBOT_PASSWORD }} quay.io

    - name: Tag image
      run: docker tag ${IMAGE_NAME}:${IMAGE_TAG} quay.io/ecoflowucl/${IMAGE_NAME}:${IMAGE_TAG}

    - name: Push image
      run: docker push quay.io/ecoflowucl/${IMAGE_NAME}:${IMAGE_TAG}

    - name: Remove docker config
      run: rm -rf /home/runner/.docker

    - name: Clean workspace after finish
      run: rm -rf $GITHUB_WORKSPACE/*