From 787d882cb4bc2463b257e685e55693b3fe0cff91 Mon Sep 17 00:00:00 2001 From: chriswyatt1 Date: Mon, 19 Aug 2024 14:24:07 +0000 Subject: [PATCH 1/2] python3 --- README.md | 2 +- chopgo/Dockerfile | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index f9ea3ea..4b0172a 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ Copy an existing workflow yaml i.e. `cp push-jcvi.yml push-your_image_name.yml` use flag `-f` to specifically choose a Dockerfile, else it will assume `Dockerfile` -2. Test the container +2. Test the container (use doecker to open the container and run the program/s of interest) `docker run --rm -it my-image bash` diff --git a/chopgo/Dockerfile b/chopgo/Dockerfile index e48e880..1fd608f 100644 --- a/chopgo/Dockerfile +++ b/chopgo/Dockerfile @@ -1,7 +1,7 @@ FROM rocker/r-base:4.3.1 RUN apt-get update && \ - apt-get install -y python3.10 wget procps libcurl4-openssl-dev libssl-dev perl && \ + apt-get install -y python3 wget procps libcurl4-openssl-dev libssl-dev perl && \ apt-get clean -y && rm -rf /var/lib/apt/lists/* RUN Rscript -e "install.packages(c('BiocManager', 'devtools', 'dplyr', 'readxl', 'writexls', 'plyr', 'gdata', 'pheatmap', 'ashr', 'ggplot2', 'ggstar'))" From 37228739b1a20174bdec1671d5886f17d0a0fb2e Mon Sep 17 00:00:00 2001 From: chriswyatt1 Date: Mon, 19 Aug 2024 14:26:19 +0000 Subject: [PATCH 2/2] change image tag --- .github/workflows/push-chopgo.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/push-chopgo.yml b/.github/workflows/push-chopgo.yml index bc0cf92..8b33eab 100755 --- a/.github/workflows/push-chopgo.yml +++ b/.github/workflows/push-chopgo.yml @@ -6,7 +6,7 @@ on: #When updating images change image tag below to correspond to changes env: IMAGE_NAME: chopgo - IMAGE_TAG: r-4.3.2_python-3.10_perl-5.38 + IMAGE_TAG: r-4.3.2_python-3_perl-5.38 jobs: build: