diff --git a/003_KM_plotter/README.md b/003_KM_plotter/README.md index ca5d3fd..5a6442a 100644 --- a/003_KM_plotter/README.md +++ b/003_KM_plotter/README.md @@ -1,7 +1,7 @@ -# Demo of the app 003_KM_plotter V10 +# Demo of the app 003_KM_plotter V11 How to use this app (see video below): -1. Open the script and run the app with an IDE such as Visual Studio Code or through Github Codespaces (see notes). +1. Open the app hosted in the Streamlit Community Cloud, running the script with an IDE such as Visual Studio Code or through Github Codespaces (an icon for that is the README of the repo Streamlit_projects). Wait for the app to load. 2. Rename the file containing the clinical data (or a cop of it) to 'clinical.txt', this is a mandatory file containing the times and events for the KM analysis. 3. Optionally, you can also upload a file containing RNA Seq data of the patients with a name 'RNA.txt'. Be sure a 'PATIENT_ID' column exists in both datasets and that these IDs are the same (not two sets of IDs). 4. Once the file(s) of interest is/are uploaded, click on 'Begin' and start selecting the parameters of interest.