From 78b6de90640ff19d8cbb88b95845f1aece6accbb Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 12:00:14 -0800
Subject: [PATCH 01/25] feat: add directory with extensions

---
 extensions/src/data_bridge/index.ts | 73 +++++++++++++++++++++++++++++
 1 file changed, 73 insertions(+)
 create mode 100644 extensions/src/data_bridge/index.ts

diff --git a/extensions/src/data_bridge/index.ts b/extensions/src/data_bridge/index.ts
new file mode 100644
index 0000000..182807e
--- /dev/null
+++ b/extensions/src/data_bridge/index.ts
@@ -0,0 +1,73 @@
+import {
+    JupyterFrontEnd,
+    JupyterFrontEndPlugin,
+} from "@jupyterlab/application";
+
+import { NotebookPanel } from "@jupyterlab/notebook";
+
+/**
+ * Initialization data for the materials-designer-bridge extension.
+ */
+const plugin: JupyterFrontEndPlugin<void> = {
+    id: "materials-designer-bridge:plugin",
+    description:
+        "Extension to pass materials data between Materials Designer and Jupyter Lite instance",
+    autoStart: true,
+    activate: async (app: JupyterFrontEnd) => {
+        console.log(
+            "MD Extension. JupyterLab extension materials-designer-bridge is activated!"
+        );
+
+        console.log(app.shell);
+
+        // @ts-ignore
+        window.sendDataToHost = (materials: any) => {
+            window.parent.postMessage(
+                {
+                    type: "from-iframe-to-host",
+                    materials: materials,
+                },
+                "*"
+            );
+        };
+
+        // @ts-ignore
+        window.requestMaterialsFromHost = () => {
+            window.parent.postMessage(
+                {
+                    type: "from-iframe-to-host",
+                    requestMaterials: true,
+                },
+                "*"
+            );
+        };
+
+        //TODO: set type for materials
+        window.addEventListener("message", async (event) => {
+            if (event.data.type === "from-host-to-iframe") {
+                let materials = event.data.materials;
+                const materialsJson = JSON.stringify(materials);
+                const code = `
+  import json
+  materials = json.loads('${materialsJson}')
+  `;
+
+                const currentWidget = app.shell.currentWidget;
+
+                if (currentWidget instanceof NotebookPanel) {
+                    const notebookPanel = currentWidget;
+                    const kernel = notebookPanel.sessionContext.session?.kernel;
+                    if (kernel) {
+                        kernel.requestExecute({ code: code });
+                    } else {
+                        console.error("No active kernel found");
+                    }
+                } else {
+                    console.error("Current active widget is not a notebook");
+                }
+            }
+        });
+    },
+};
+
+export default plugin;

From 3e05c9e36144fa484f5ef8aafe1da0e050ad17bf Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 12:04:33 -0800
Subject: [PATCH 02/25] update: generalize to pass any data

---
 extensions/src/data_bridge/index.ts | 22 ++++++++++------------
 1 file changed, 10 insertions(+), 12 deletions(-)

diff --git a/extensions/src/data_bridge/index.ts b/extensions/src/data_bridge/index.ts
index 182807e..cd8aadc 100644
--- a/extensions/src/data_bridge/index.ts
+++ b/extensions/src/data_bridge/index.ts
@@ -6,26 +6,24 @@ import {
 import { NotebookPanel } from "@jupyterlab/notebook";
 
 /**
- * Initialization data for the materials-designer-bridge extension.
+ * Initialization data for the data-bridge extension.
  */
 const plugin: JupyterFrontEndPlugin<void> = {
-    id: "materials-designer-bridge:plugin",
+    id: "data-bridge:plugin",
     description:
-        "Extension to pass materials data between Materials Designer and Jupyter Lite instance",
+        "Extension to pass JSON data between host page and Jupyter Lite instance",
     autoStart: true,
     activate: async (app: JupyterFrontEnd) => {
-        console.log(
-            "MD Extension. JupyterLab extension materials-designer-bridge is activated!"
-        );
+        console.log("JupyterLab extension data-bridge is activated!");
 
         console.log(app.shell);
 
         // @ts-ignore
-        window.sendDataToHost = (materials: any) => {
+        window.sendDataToHost = (data: any) => {
             window.parent.postMessage(
                 {
                     type: "from-iframe-to-host",
-                    materials: materials,
+                    data: data,
                 },
                 "*"
             );
@@ -42,14 +40,14 @@ const plugin: JupyterFrontEndPlugin<void> = {
             );
         };
 
-        //TODO: set type for materials
+        //TODO: set type for data
         window.addEventListener("message", async (event) => {
             if (event.data.type === "from-host-to-iframe") {
-                let materials = event.data.materials;
-                const materialsJson = JSON.stringify(materials);
+                let data = event.data.data;
+                const dataJson = JSON.stringify(data);
                 const code = `
   import json
-  materials = json.loads('${materialsJson}')
+  data = json.loads('${dataJson}')
   `;
 
                 const currentWidget = app.shell.currentWidget;

From ca2a339c63fd01fd14e93b46d11f90cf1f5382d1 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 14:00:01 -0800
Subject: [PATCH 03/25] feat: add setup script

---
 setup.sh | 72 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 72 insertions(+)
 create mode 100644 setup.sh

diff --git a/setup.sh b/setup.sh
new file mode 100644
index 0000000..164cfb3
--- /dev/null
+++ b/setup.sh
@@ -0,0 +1,72 @@
+PYTHON_VERSION="3.8.6"
+NODE_VERSION="14.19"
+EXTENSION_NAME="data_bridge"
+COOKIECUTTER_TEMPLATE_PATH="$HOME/.cookiecutters/extension-cookiecutter-ts"
+GITHUB_TEMPLATE_URL="https://github.com/jupyterlab/extension-cookiecutter-ts"
+
+kind="frontend"
+author_name="Mat3ra"
+author_email="info@mat3ra.com"
+labextension_name=$EXTENSION_NAME
+python_name=$EXTENSION_NAME
+project_short_description="A JupyterLab extension that allows you to send data between notebook and host page"
+has_settings=n
+has_binder=n
+test=n
+repository="https://github.com/exabyte-io/jupyter-lite"
+
+# Ensure Python and Node.js are installed and switch to the correct versions
+if [ ! -d "$HOME/.pyenv/versions/$PYTHON_VERSION" ]; then
+    pyenv install $PYTHON_VERSION
+fi
+pyenv local $PYTHON_VERSION
+
+python -m venv .venv
+source .venv/bin/activate
+
+nvm install $NODE_VERSION
+nvm use $NODE_VERSION
+
+pip install cookiecutter
+
+# Create directory if it doesn't exist
+if [ ! -d "extensions/dist" ]; then
+    mkdir -p extensions/dist
+fi
+cd extensions/dist
+
+if [ ! -d "$COOKIECUTTER_TEMPLATE_PATH" ]; then
+
+    cookiecutter $GITHUB_TEMPLATE_URL\
+        kind="$kind" \
+        author_name="$author_name" \
+        author_email="$author_email" \
+        labextension_name="$labextension_name" \
+        python_name="$python_name" \
+        project_short_description="$project_short_description" \
+        has_settings="$has_settings" \
+        has_binder="$has_binder" \
+        test="$test" \
+        repository="$repository"
+    echo "Created extension using cookiecutter template."
+else
+    cookiecutter $COOKIECUTTER_TEMPLATE_PATH \
+        kind="$kind" \
+        author_name="$author_name" \
+        author_email="$author_email" \
+        labextension_name="$labextension_name" \
+        python_name="$python_name" \
+        project_short_description="$project_short_description" \
+        has_settings="$has_settings" \
+        has_binder="$has_binder" \
+        test="$test" \
+        repository="$repository"
+    echo "Created extension using cached cookiecutter template."
+fi
+
+# Ensure the source and destination directories for copying exist
+if [ -f "../src/$EXTENSION_NAME/index.ts" ] && [ -d "./$EXTENSION_NAME/src" ]; then
+    cp "../src/$EXTENSION_NAME/index.ts" "./$EXTENSION_NAME/src/index.ts"
+else
+    echo "Source file or destination directory not found. Skipping copy."
+fi

From 507564d32e0134fa882fb85f54cd60490a495883 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 14:18:46 -0800
Subject: [PATCH 04/25] update: export nvm

---
 setup.sh | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/setup.sh b/setup.sh
index 164cfb3..3d0236a 100644
--- a/setup.sh
+++ b/setup.sh
@@ -24,6 +24,9 @@ pyenv local $PYTHON_VERSION
 python -m venv .venv
 source .venv/bin/activate
 
+export NVM_DIR="$HOME/.nvm"
+[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh"
+
 nvm install $NODE_VERSION
 nvm use $NODE_VERSION
 

From 8afe601dfceb43b57e99dae3448548dc58656f06 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 14:22:09 -0800
Subject: [PATCH 05/25] chore: optimize repetition

---
 setup.sh | 50 ++++++++++++++++++++++++--------------------------
 1 file changed, 24 insertions(+), 26 deletions(-)

diff --git a/setup.sh b/setup.sh
index 3d0236a..a85eb24 100644
--- a/setup.sh
+++ b/setup.sh
@@ -15,6 +15,21 @@ has_binder=n
 test=n
 repository="https://github.com/exabyte-io/jupyter-lite"
 
+COOKIECUTTER_OPTIONS=(
+    "$GITHUB_TEMPLATE_URL"
+    "--no-input"
+    "kind=$kind"
+    "author_name=$author_name"
+    "author_email=$author_email"
+    "labextension_name=$labextension_name"
+    "python_name=$python_name"
+    "project_short_description=\"$project_short_description\""
+    "has_settings=$has_settings"
+    "has_binder=$has_binder"
+    "test=$test"
+    "repository=$repository"
+)
+
 # Ensure Python and Node.js are installed and switch to the correct versions
 if [ ! -d "$HOME/.pyenv/versions/$PYTHON_VERSION" ]; then
     pyenv install $PYTHON_VERSION
@@ -38,38 +53,21 @@ if [ ! -d "extensions/dist" ]; then
 fi
 cd extensions/dist
 
+# Use cookiecutter with the template path if it exists, otherwise use the URL
 if [ ! -d "$COOKIECUTTER_TEMPLATE_PATH" ]; then
-
-    cookiecutter $GITHUB_TEMPLATE_URL\
-        kind="$kind" \
-        author_name="$author_name" \
-        author_email="$author_email" \
-        labextension_name="$labextension_name" \
-        python_name="$python_name" \
-        project_short_description="$project_short_description" \
-        has_settings="$has_settings" \
-        has_binder="$has_binder" \
-        test="$test" \
-        repository="$repository"
+    cookiecutter "${COOKIECUTTER_OPTIONS[@]}"
     echo "Created extension using cookiecutter template."
 else
-    cookiecutter $COOKIECUTTER_TEMPLATE_PATH \
-        kind="$kind" \
-        author_name="$author_name" \
-        author_email="$author_email" \
-        labextension_name="$labextension_name" \
-        python_name="$python_name" \
-        project_short_description="$project_short_description" \
-        has_settings="$has_settings" \
-        has_binder="$has_binder" \
-        test="$test" \
-        repository="$repository"
+    COOKIECUTTER_OPTIONS[0]="$COOKIECUTTER_TEMPLATE_PATH"
+    cookiecutter "${COOKIECUTTER_OPTIONS[@]}"
     echo "Created extension using cached cookiecutter template."
 fi
 
-# Ensure the source and destination directories for copying exist
-if [ -f "../src/$EXTENSION_NAME/index.ts" ] && [ -d "./$EXTENSION_NAME/src" ]; then
-    cp "../src/$EXTENSION_NAME/index.ts" "./$EXTENSION_NAME/src/index.ts"
+# Copy the index.ts file if both source and destination directories exist
+SRC_FILE="../src/$EXTENSION_NAME/index.ts"
+DEST_DIR="./$EXTENSION_NAME/src"
+if [ -f "$SRC_FILE" ] && [ -d "$DEST_DIR" ]; then
+    cp "$SRC_FILE" "$DEST_DIR/index.ts"
 else
     echo "Source file or destination directory not found. Skipping copy."
 fi

From 30a5820dec267c8f8e22514e83d9bdb0b80d7764 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 14:31:26 -0800
Subject: [PATCH 06/25] fix: a typo

---
 setup.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.sh b/setup.sh
index a85eb24..5674c23 100644
--- a/setup.sh
+++ b/setup.sh
@@ -23,7 +23,7 @@ COOKIECUTTER_OPTIONS=(
     "author_email=$author_email"
     "labextension_name=$labextension_name"
     "python_name=$python_name"
-    "project_short_description=\"$project_short_description\""
+    "project_short_description=$project_short_description"
     "has_settings=$has_settings"
     "has_binder=$has_binder"
     "test=$test"

From f3310090f5d49893f1286fa8999970772e83d6b4 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 14:31:50 -0800
Subject: [PATCH 07/25] update: add extension building

---
 setup.sh | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/setup.sh b/setup.sh
index 5674c23..b09bfea 100644
--- a/setup.sh
+++ b/setup.sh
@@ -71,3 +71,13 @@ if [ -f "$SRC_FILE" ] && [ -d "$DEST_DIR" ]; then
 else
     echo "Source file or destination directory not found. Skipping copy."
 fi
+
+cd $EXTENSION_NAME
+
+# Install dependencies
+jlpm add @jupyterlab/application
+jlpm add @jupyterlab/notebook
+
+# Build the extension
+jlpm run build
+jupyter labextension list

From e26a94f26aafb9b9e086ce70b97caec089616eb9 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 15:54:49 -0800
Subject: [PATCH 08/25] update: install extension

---
 setup.sh | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/setup.sh b/setup.sh
index b09bfea..8ee481c 100644
--- a/setup.sh
+++ b/setup.sh
@@ -1,5 +1,5 @@
-PYTHON_VERSION="3.8.6"
-NODE_VERSION="14.19"
+PYTHON_VERSION="3.10"
+NODE_VERSION="18"
 EXTENSION_NAME="data_bridge"
 COOKIECUTTER_TEMPLATE_PATH="$HOME/.cookiecutters/extension-cookiecutter-ts"
 GITHUB_TEMPLATE_URL="https://github.com/jupyterlab/extension-cookiecutter-ts"
@@ -45,7 +45,7 @@ export NVM_DIR="$HOME/.nvm"
 nvm install $NODE_VERSION
 nvm use $NODE_VERSION
 
-pip install cookiecutter
+pip install cookiecutter jupyterlab==4 jupyterlite-core
 
 # Create directory if it doesn't exist
 if [ ! -d "extensions/dist" ]; then
@@ -58,7 +58,7 @@ if [ ! -d "$COOKIECUTTER_TEMPLATE_PATH" ]; then
     cookiecutter "${COOKIECUTTER_OPTIONS[@]}"
     echo "Created extension using cookiecutter template."
 else
-    COOKIECUTTER_OPTIONS[0]="$COOKIECUTTER_TEMPLATE_PATH"
+    # COOKIECUTTER_OPTIONS[0]="$COOKIECUTTER_TEMPLATE_PATH"  
     cookiecutter "${COOKIECUTTER_OPTIONS[@]}"
     echo "Created extension using cached cookiecutter template."
 fi
@@ -80,4 +80,7 @@ jlpm add @jupyterlab/notebook
 
 # Build the extension
 jlpm run build
+
+# Install the extension
+jupyter labextension install .
 jupyter labextension list

From 89cc9c58672ddeffa0bc2d7fb4a2fa887388b8b5 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 15:55:17 -0800
Subject: [PATCH 09/25] chore: get to top level

---
 setup.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/setup.sh b/setup.sh
index 8ee481c..db8588b 100644
--- a/setup.sh
+++ b/setup.sh
@@ -84,3 +84,5 @@ jlpm run build
 # Install the extension
 jupyter labextension install .
 jupyter labextension list
+
+cd ../../

From 3adffef33ff4a2b48946f3747ee73275b9c64aa3 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 15:55:48 -0800
Subject: [PATCH 10/25] chore: get to top level

---
 setup.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.sh b/setup.sh
index db8588b..b6afc58 100644
--- a/setup.sh
+++ b/setup.sh
@@ -85,4 +85,4 @@ jlpm run build
 jupyter labextension install .
 jupyter labextension list
 
-cd ../../
+cd ../../../

From 6150ab82e1b474774c4ff2b6d0f9eb53f525e76a Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 16:43:13 -0800
Subject: [PATCH 11/25] update: install extenison via requirement.txt

---
 setup.sh | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/setup.sh b/setup.sh
index b6afc58..e9e0791 100644
--- a/setup.sh
+++ b/setup.sh
@@ -77,12 +77,12 @@ cd $EXTENSION_NAME
 # Install dependencies
 jlpm add @jupyterlab/application
 jlpm add @jupyterlab/notebook
+jlpm add @exabyte-io/code.js
 
 # Build the extension
 jlpm run build
 
-# Install the extension
-jupyter labextension install .
-jupyter labextension list
-
 cd ../../../
+
+# add to requirements.txt
+echo "./extensions/dist/$EXTENSION_NAME" >> requirements.txt

From 964346bf84f4a82268af73208110ae95afb71022 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 16:43:41 -0800
Subject: [PATCH 12/25] update: material -> data

---
 extensions/src/data_bridge/index.ts | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/extensions/src/data_bridge/index.ts b/extensions/src/data_bridge/index.ts
index cd8aadc..a826fd8 100644
--- a/extensions/src/data_bridge/index.ts
+++ b/extensions/src/data_bridge/index.ts
@@ -16,8 +16,6 @@ const plugin: JupyterFrontEndPlugin<void> = {
     activate: async (app: JupyterFrontEnd) => {
         console.log("JupyterLab extension data-bridge is activated!");
 
-        console.log(app.shell);
-
         // @ts-ignore
         window.sendDataToHost = (data: any) => {
             window.parent.postMessage(
@@ -30,11 +28,11 @@ const plugin: JupyterFrontEndPlugin<void> = {
         };
 
         // @ts-ignore
-        window.requestMaterialsFromHost = () => {
+        window.requestDataFromHost = () => {
             window.parent.postMessage(
                 {
                     type: "from-iframe-to-host",
-                    requestMaterials: true,
+                    requestData: true,
                 },
                 "*"
             );

From 00dd3a54958068319a9f0b33eb399c6d1571557b Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 17:00:34 -0800
Subject: [PATCH 13/25] update: build extension in GHA

---
 .github/workflows/deploy.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index 77fa9fe..64c1e8b 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -18,6 +18,9 @@ jobs:
         uses: actions/setup-python@v4
         with:
           python-version: '3.10'
+      - name: Setup extension
+        run: |
+          sh ./setup.sh
       - name: Install the dependencies
         run: |
           python -m pip install -r requirements.txt

From 204ec36d6c4bc14c1d98119d4afd870b33b0dd92 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 17:04:11 -0800
Subject: [PATCH 14/25] update: build extension in GHA 1

---
 .github/workflows/deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index 64c1e8b..df164e7 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -20,7 +20,7 @@ jobs:
           python-version: '3.10'
       - name: Setup extension
         run: |
-          sh ./setup.sh
+          bash ./setup.sh
       - name: Install the dependencies
         run: |
           python -m pip install -r requirements.txt

From afca55df166fba71883eda7503491434138e0818 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 18:17:04 -0800
Subject: [PATCH 15/25] update: bump jupyterlab to 4.0.6

---
 requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.txt b/requirements.txt
index 678147c..d220149 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,6 @@
 # Core modules (mandatory)
 jupyterlite-core==0.1.3
-jupyterlab~=3.5.1
+jupyterlab~=4.0.6
 
 # Python kernel (optional)
 jupyterlite-pyodide-kernel==0.1.3

From d521216b9e5ddd7c467f7853237844f70ca7a0b1 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 19:53:42 -0800
Subject: [PATCH 16/25] update: add jl develop

---
 setup.sh | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/setup.sh b/setup.sh
index e9e0791..7d13171 100644
--- a/setup.sh
+++ b/setup.sh
@@ -73,6 +73,8 @@ else
 fi
 
 cd $EXTENSION_NAME
+pip install -ve .
+jupyter labextension develop --overwrite .
 
 # Install dependencies
 jlpm add @jupyterlab/application
@@ -85,4 +87,6 @@ jlpm run build
 cd ../../../
 
 # add to requirements.txt
-echo "./extensions/dist/$EXTENSION_NAME" >> requirements.txt
+LINE="./extensions/dist/$EXTENSION_NAME"
+FILE='requirements.txt'
+grep -qF -- "$LINE" "$FILE" || echo "$LINE" >> "$FILE"

From 408853126341b86aeb8e390e9f9faada8736c588 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 19:56:56 -0800
Subject: [PATCH 17/25] chore: update gitignore

---
 .gitignore | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.gitignore b/.gitignore
index b661992..c581d82 100644
--- a/.gitignore
+++ b/.gitignore
@@ -114,3 +114,4 @@ dmypy.json
 # jupyterlite
 *.doit.db
 _output
+.idea

From 7752201a68f90df26a047bcc1e672e1d41f22216 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 20:18:43 -0800
Subject: [PATCH 18/25] update: setup.sh

---
 setup.sh | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/setup.sh b/setup.sh
index 7d13171..f6d1d29 100644
--- a/setup.sh
+++ b/setup.sh
@@ -1,3 +1,9 @@
+#!/bin/bash
+# This script creates a JupyterLab extension using the cookiecutter template
+# and updates the requirements.txt file to make it installable in the current 
+# JupyterLab environment.
+# It assumes that pyenv and nvm are installed and configured correctly.
+
 PYTHON_VERSION="3.10"
 NODE_VERSION="18"
 EXTENSION_NAME="data_bridge"
@@ -90,3 +96,10 @@ cd ../../../
 LINE="./extensions/dist/$EXTENSION_NAME"
 FILE='requirements.txt'
 grep -qF -- "$LINE" "$FILE" || echo "$LINE" >> "$FILE"
+
+# Install extension
+[[ ! -z $INSTALL ]] && python -m pip install -r requirements.txt
+
+# Build JupyterLite
+[[ ! -z $BUILD ]] && jupyter lite build --contents content --output-dir dist
+

From 64ca7a5d532a2a4fce62068337ecc944d883a85c Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 20:41:18 -0800
Subject: [PATCH 19/25] chore: update gitignore

---
 .gitignore | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.gitignore b/.gitignore
index c581d82..04f04a3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,6 +23,8 @@ __pycache__/
 build/
 develop-eggs/
 dist/
+# To commit the pre-buit extension sources
+!extensions/dist/
 downloads/
 eggs/
 .eggs/
@@ -115,3 +117,5 @@ dmypy.json
 *.doit.db
 _output
 .idea
+.venv
+.yarn

From 506f722346c52dd1fe5193d4edc5a1b1eb98f472 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 20:41:32 -0800
Subject: [PATCH 20/25] chore: update README

---
 README.md | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index f8d0424..d77c25e 100644
--- a/README.md
+++ b/README.md
@@ -14,8 +14,8 @@ JupyterLite deployed as a static site to GitHub Pages, for demo purposes.
 
 JupyterLite is being tested against modern web browsers:
 
-- Firefox 90+
-- Chromium 89+
+-   Firefox 90+
+-   Chromium 89+
 
 ## Deploy your JupyterLite website on GitHub Pages
 
@@ -25,5 +25,13 @@ Check out the guide on the JupyterLite documentation: https://jupyterlite.readth
 
 For more info, keep an eye on the JupyterLite documentation:
 
-- How-to Guides: https://jupyterlite.readthedocs.io/en/latest/howto/index.html
-- Reference: https://jupyterlite.readthedocs.io/en/latest/reference/index.html
+-   How-to Guides: https://jupyterlite.readthedocs.io/en/latest/howto/index.html
+-   Reference: https://jupyterlite.readthedocs.io/en/latest/reference/index.html
+
+## Additional Notes
+
+From Team Mat3ra:
+
+-   `data_bridge` extensions is built using the `setup.sh`
+-   pass `INSTALL=1 BUILD=1` to also build and install the jupyter lite with extension
+-   requires `pyenv` and `npm` installed

From aa869f7e898e42ce3f3c145c29cfc9e283b9685c Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 20:48:39 -0800
Subject: [PATCH 21/25] chore: update README

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index d77c25e..769f730 100644
--- a/README.md
+++ b/README.md
@@ -34,4 +34,5 @@ From Team Mat3ra:
 
 -   `data_bridge` extensions is built using the `setup.sh`
 -   pass `INSTALL=1 BUILD=1` to also build and install the jupyter lite with extension
+-   `requirements.txt` is updated as part of the above to include the extension
 -   requires `pyenv` and `npm` installed

From 4ab01cb163579aede25e80d369e8074e8cf1d9f1 Mon Sep 17 00:00:00 2001
From: VsevolodX <79542055+VsevolodX@users.noreply.github.com>
Date: Mon, 29 Jan 2024 20:50:01 -0800
Subject: [PATCH 22/25] chore: revert dist exclusion

---
 .gitignore | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.gitignore b/.gitignore
index 04f04a3..4936b85 100644
--- a/.gitignore
+++ b/.gitignore
@@ -23,8 +23,6 @@ __pycache__/
 build/
 develop-eggs/
 dist/
-# To commit the pre-buit extension sources
-!extensions/dist/
 downloads/
 eggs/
 .eggs/

From fa567e1e0d45af9938e465766107ddb7b7e91baf Mon Sep 17 00:00:00 2001
From: Timur Bazhirov <timur@exabyte.io>
Date: Mon, 29 Jan 2024 20:57:44 -0800
Subject: [PATCH 23/25] Update index.ts

---
 extensions/src/data_bridge/index.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/extensions/src/data_bridge/index.ts b/extensions/src/data_bridge/index.ts
index a826fd8..99be898 100644
--- a/extensions/src/data_bridge/index.ts
+++ b/extensions/src/data_bridge/index.ts
@@ -38,7 +38,7 @@ const plugin: JupyterFrontEndPlugin<void> = {
             );
         };
 
-        //TODO: set type for data
+        // TODO: set type for data
         window.addEventListener("message", async (event) => {
             if (event.data.type === "from-host-to-iframe") {
                 let data = event.data.data;

From 61ec2e490f1511fc2402ea375ccbb38518c7c376 Mon Sep 17 00:00:00 2001
From: Timur Bazhirov <timur@exabyte.io>
Date: Mon, 29 Jan 2024 21:00:23 -0800
Subject: [PATCH 24/25] Update index.ts

---
 extensions/src/data_bridge/index.ts | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/extensions/src/data_bridge/index.ts b/extensions/src/data_bridge/index.ts
index 99be898..d54f59a 100644
--- a/extensions/src/data_bridge/index.ts
+++ b/extensions/src/data_bridge/index.ts
@@ -7,6 +7,7 @@ import { NotebookPanel } from "@jupyterlab/notebook";
 
 /**
  * Initialization data for the data-bridge extension.
+ * Similar to https://jupyterlite.readthedocs.io/en/latest/howto/configure/advanced/iframe.html
  */
 const plugin: JupyterFrontEndPlugin<void> = {
     id: "data-bridge:plugin",
@@ -47,7 +48,8 @@ const plugin: JupyterFrontEndPlugin<void> = {
   import json
   data = json.loads('${dataJson}')
   `;
-
+                // Similar to https://jupyterlab.readthedocs.io/en/stable/api/classes/application.LabShell.html#currentWidget
+                // https://jupyterlite.readthedocs.io/en/latest/reference/api/ts/interfaces/jupyterlite_application.ISingleWidgetShell.html#currentwidget
                 const currentWidget = app.shell.currentWidget;
 
                 if (currentWidget instanceof NotebookPanel) {

From dfa0f556651bf2ec23a646822291ba203dcbe099 Mon Sep 17 00:00:00 2001
From: Timur Bazhirov <timur@exabyte.io>
Date: Mon, 29 Jan 2024 21:01:12 -0800
Subject: [PATCH 25/25] Update README.md

---
 README.md | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/README.md b/README.md
index 769f730..a876f56 100644
--- a/README.md
+++ b/README.md
@@ -14,8 +14,8 @@ JupyterLite deployed as a static site to GitHub Pages, for demo purposes.
 
 JupyterLite is being tested against modern web browsers:
 
--   Firefox 90+
--   Chromium 89+
+- Firefox 90+
+- Chromium 89+
 
 ## Deploy your JupyterLite website on GitHub Pages
 
@@ -25,14 +25,14 @@ Check out the guide on the JupyterLite documentation: https://jupyterlite.readth
 
 For more info, keep an eye on the JupyterLite documentation:
 
--   How-to Guides: https://jupyterlite.readthedocs.io/en/latest/howto/index.html
--   Reference: https://jupyterlite.readthedocs.io/en/latest/reference/index.html
+- How-to Guides: https://jupyterlite.readthedocs.io/en/latest/howto/index.html
+- Reference: https://jupyterlite.readthedocs.io/en/latest/reference/index.html
 
 ## Additional Notes
 
 From Team Mat3ra:
 
--   `data_bridge` extensions is built using the `setup.sh`
--   pass `INSTALL=1 BUILD=1` to also build and install the jupyter lite with extension
--   `requirements.txt` is updated as part of the above to include the extension
--   requires `pyenv` and `npm` installed
+- `data_bridge` extensions is built using the `setup.sh`
+- pass `INSTALL=1 BUILD=1` to also build and install the jupyter lite with extension
+- `requirements.txt` is updated as part of the above to include the extension
+- requires `pyenv` and `npm` installed