diff --git a/dist/js/cell/cell.d.ts b/dist/js/cell/cell.d.ts index 20624b89..6883ba58 100644 --- a/dist/js/cell/cell.d.ts +++ b/dist/js/cell/cell.d.ts @@ -1,6 +1,7 @@ +import CodeMath from "@mat3ra/code/dist/js/math"; import { Coordinate } from "../basis/types"; import { Vector, VectorsAsArray } from "../lattice/types"; -type Point = Coordinate | math.Matrix | math.MathType; +type Point = Coordinate | CodeMath.Matrix | CodeMath.MathType; export declare class Cell { tolerance: number; vector1: Vector; @@ -21,7 +22,7 @@ export declare class Cell { /** * Convert a point (in crystal coordinates) to cartesian. */ - convertPointToCartesian(point: Point): import("mathjs").MathType; + convertPointToCartesian(point: Point): CodeMath.MathType; /** * Convert a point (in cartesian coordinates) to crystal (fractional). */ diff --git a/dist/js/lattice/lattice.d.ts b/dist/js/lattice/lattice.d.ts index c185a20e..1cfe2c58 100644 --- a/dist/js/lattice/lattice.d.ts +++ b/dist/js/lattice/lattice.d.ts @@ -83,7 +83,7 @@ export declare class Lattice extends LatticeBravais implements LatticeSchema { beta: number; gamma: number; units: { - length?: "bohr" | "angstrom" | undefined; + length?: "angstrom" | "bohr" | undefined; angle?: "degree" | "radian" | undefined; }; type: "CUB" | "BCC" | "FCC" | "TET" | "MCL" | "ORC" | "ORCC" | "ORCF" | "ORCI" | "HEX" | "BCT" | "TRI" | "MCLC" | "RHL"; diff --git a/dist/js/material.d.ts b/dist/js/material.d.ts index 8eaf1c60..15678ee0 100644 --- a/dist/js/material.d.ts +++ b/dist/js/material.d.ts @@ -1,5 +1,5 @@ import { HasConsistencyChecksHasMetadataNamedDefaultableInMemoryEntity } from "@mat3ra/code/dist/js/entity"; -import { AnyObject } from "@mat3ra/code/dist/js/entity/in_memory"; +import { AnyObject } from "@mat3ra/esse/dist/js/esse/types"; import { ConsistencyCheck, DerivedPropertiesSchema, FileSourceSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types"; import { ConstrainedBasis } from "./basis/constrained_basis"; import { Constraint } from "./constraints/constraints"; @@ -483,9 +483,7 @@ export declare const Material: { setProps(json?: AnyObject | undefined): any; toJSON(exclude?: string[] | undefined): AnyObject; toJSONSafe(exclude?: string[] | undefined): AnyObject; - toJSONQuick(exclude?: string[] | undefined): AnyObject; /** - * Returns a copy of the material with conventional cell constructed instead of primitive. - */ + toJSONQuick(exclude?: string[] | undefined): AnyObject; clone(extraContext?: object | undefined): any; validate(): void; clean(config: AnyObject): AnyObject; @@ -511,10 +509,7 @@ export declare const Material: { toJSONQuick(exclude?: string[] | undefined): AnyObject; clone(extraContext?: object | undefined): any; validate(): void; - clean(config: AnyObject): AnyObject; /** - * @summary a series of checks for the material's basis and returns an array of results in ConsistencyChecks format. - * @returns Array of checks results - */ + clean(config: AnyObject): AnyObject; isValid(): boolean; id: string; readonly cls: string; diff --git a/dist/js/math.d.ts b/dist/js/math.d.ts index 946405a4..d230e6f0 100644 --- a/dist/js/math.d.ts +++ b/dist/js/math.d.ts @@ -35,7 +35,7 @@ declare const _default: { uninitialized: any; version: string; expression: import("mathjs").MathNode; - json: mathjs.MathJsJson; + json: import("mathjs").MathJsJson; config: (options: any) => void; lsolve(L: import("mathjs").Matrix | import("mathjs").MathArray, b: import("mathjs").Matrix | import("mathjs").MathArray): import("mathjs").Matrix | import("mathjs").MathArray; lup(A?: import("mathjs").Matrix | import("mathjs").MathArray | undefined): import("mathjs").MathArray; @@ -184,7 +184,7 @@ declare const _default: { re(x: number | import("mathjs").Matrix | import("mathjs").BigNumber | import("mathjs").Complex | import("mathjs").MathArray): number | import("mathjs").Matrix | import("mathjs").BigNumber | import("mathjs").MathArray; bignumber(x?: string | number | boolean | import("mathjs").Matrix | import("mathjs").MathArray | undefined): import("mathjs").BigNumber; boolean(x: string | number | boolean | import("mathjs").Matrix | import("mathjs").MathArray): boolean | import("mathjs").Matrix | import("mathjs").MathArray; - chain(value?: any): any; + chain(value?: any): import("mathjs").MathJsChain; complex(arg?: string | import("mathjs").Complex | import("mathjs").MathArray | import("mathjs").PolarCoordinates | undefined): import("mathjs").Complex; complex(re: number, im: number): import("mathjs").Complex; fraction(numerator: string | number | import("mathjs").Matrix | import("mathjs").MathArray, denominator?: string | number | import("mathjs").Matrix | import("mathjs").MathArray | undefined): import("mathjs").Matrix | import("mathjs").Fraction | import("mathjs").MathArray; diff --git a/dist/js/tools/material.js b/dist/js/tools/material.js index d0e56a9d..c6655eb2 100644 --- a/dist/js/tools/material.js +++ b/dist/js/tools/material.js @@ -1,9 +1,6 @@ "use strict"; -var __importDefault = (this && this.__importDefault) || function (mod) { - return (mod && mod.__esModule) ? mod : { "default": mod }; -}; Object.defineProperty(exports, "__esModule", { value: true }); -const mathjs_1 = __importDefault(require("mathjs")); +const math_1 = require("@mat3ra/code/dist/js/math"); const constants_1 = require("../constants"); const lattice_1 = require("../lattice/lattice"); /** @@ -40,8 +37,8 @@ function getBasisConfigTranslatedToCenter(material) { material.toCartesian(); const updatedBasis = material.Basis; const centerOfCoordinates = updatedBasis.centerOfCoordinatesPoint; - const centerOfLattice = mathjs_1.default.multiply(0.5, material.Lattice.vectorArrays.reduce((a, b) => mathjs_1.default.add(a, b))); - const translationVector = mathjs_1.default.subtract(centerOfLattice, centerOfCoordinates); + const centerOfLattice = math_1.math.multiply(0.5, material.Lattice.vectorArrays.reduce((a, b) => math_1.math.add(a, b))); + const translationVector = math_1.math.subtract(centerOfLattice, centerOfCoordinates); updatedBasis.translateByVector(translationVector); material.setBasis(updatedBasis.toJSON()); if (originalUnits !== constants_1.ATOMIC_COORD_UNITS.cartesian) diff --git a/dist/js/types.d.ts b/dist/js/types.d.ts index 2e5c1eaa..4c171422 100644 --- a/dist/js/types.d.ts +++ b/dist/js/types.d.ts @@ -1,3 +1,3 @@ -import { AnyObject } from "@mat3ra/code/dist/js/entity/in_memory"; +import { AnyObject } from "@mat3ra/esse/dist/js/esse/types"; import { MaterialSchema } from "@mat3ra/esse/dist/js/types"; export type MaterialJSON = MaterialSchema & AnyObject; diff --git a/package-lock.json b/package-lock.json index c2d404e8..5d40e8b0 100644 --- a/package-lock.json +++ b/package-lock.json @@ -742,18 +742,18 @@ } }, "@babel/plugin-syntax-typescript": { - "version": "7.24.1", - "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-typescript/-/plugin-syntax-typescript-7.24.1.tgz", - "integrity": 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"@babel/register": "^7.22.15", "@babel/runtime-corejs3": "^7.16.8", "@exabyte-io/eslint-config": "^2023.8.29-1", - "@mat3ra/code": "2024.3.25-3", - "@mat3ra/esse": "2024.3.25-6", - "@mat3ra/tsconfig": "^2024.3.25-5", + "@mat3ra/code": "2024.6.4-0", + "@mat3ra/esse": "2024.6.4-1", + "@mat3ra/tsconfig": "2024.6.3-0", "@types/crypto-js": "^4.2.2", - "@types/mathjs": "^3.21.1", "@typescript-eslint/eslint-plugin": "^5.9.1", "@typescript-eslint/parser": "^5.9.1", "chai": "^4.3.4", @@ -72,7 +71,6 @@ "array-almost-equal": "^1.0.0", "crypto-js": "4.2.0", "lodash": "^4.17.*", - "mathjs": "12.4.1", "ts-node": "^10.9.1", "typescript": "^4.5.5", "underscore": "^1.8.3", diff --git a/src/js/cell/cell.ts b/src/js/cell/cell.ts index 556f34c7..ba37db15 100644 --- a/src/js/cell/cell.ts +++ b/src/js/cell/cell.ts @@ -1,4 +1,4 @@ -import { math } from "@mat3ra/code/dist/js/math"; +import CodeMath, { math } from "@mat3ra/code/dist/js/math"; import { Coordinate } from "../basis/types"; import constants from "../constants"; @@ -10,7 +10,7 @@ const INV = math.inv; // @ts-ignore const MATRIX_MULT = (...args) => MULT(...args.map((x) => MATRIX(x))).toArray(); -type Point = Coordinate | math.Matrix | math.MathType; +type Point = Coordinate | CodeMath.Matrix | CodeMath.MathType; /* * Cell represents a unit cell in geometrical form: 3x3 matrix where rows are cell vectors. @@ -64,7 +64,7 @@ export class Cell { /** * Convert a point (in crystal coordinates) to cartesian. */ - convertPointToCartesian(point: Point) { + convertPointToCartesian(point: Point): CodeMath.MathType { return MULT(point, this.vectorsAsArray); } diff --git a/src/js/material.ts b/src/js/material.ts index 87404c3d..0c093824 100644 --- a/src/js/material.ts +++ b/src/js/material.ts @@ -1,5 +1,5 @@ import { HasConsistencyChecksHasMetadataNamedDefaultableInMemoryEntity } from "@mat3ra/code/dist/js/entity"; -import { AnyObject } from "@mat3ra/code/dist/js/entity/in_memory"; +import { AnyObject } from "@mat3ra/esse/dist/js/esse/types"; import { ConsistencyCheck, DerivedPropertiesSchema, diff --git a/src/js/math.js b/src/js/math.ts similarity index 50% rename from src/js/math.js rename to src/js/math.ts index d9544e24..5eaba1e0 100644 --- a/src/js/math.js +++ b/src/js/math.ts @@ -1,6 +1,6 @@ // TODO: adjust the imports and remove the need for re-exporting -import { math as codeJSMath } from "@mat3ra/code/dist/js/math"; +import { math } from "@mat3ra/code/dist/js/math"; export default { - ...codeJSMath, + ...math, }; diff --git a/src/js/tools/material.js b/src/js/tools/material.js index 5f1c0951..e3d7ca8f 100644 --- a/src/js/tools/material.js +++ b/src/js/tools/material.js @@ -1,4 +1,4 @@ -import math from "mathjs"; +import { math } from "@mat3ra/code/dist/js/math"; import { ATOMIC_COORD_UNITS } from "../constants"; import { Lattice } from "../lattice/lattice"; diff --git a/src/js/types.ts b/src/js/types.ts index c705c622..d128eb2f 100644 --- a/src/js/types.ts +++ b/src/js/types.ts @@ -1,4 +1,4 @@ -import { AnyObject } from "@mat3ra/code/dist/js/entity/in_memory"; +import { AnyObject } from "@mat3ra/esse/dist/js/esse/types"; import { MaterialSchema } from "@mat3ra/esse/dist/js/types"; export type MaterialJSON = MaterialSchema & AnyObject;