sqlite3.OperationalError: no such column: custom_id

[NatJWalker-Hale]

Hi guys,

I am having problems trying to do runs with a fresh install of PyPHLAWD and a freshly made pln db from phlawd_db_maker 0.3. The full error is this:

Traceback (most recent call last):
  File "/home/nat/Applications/PyPHLAWD/src/populate_dirs_first_wc.py", line 45, in <module>
    mfid_in(tid,DB,dirl+dirr+"/"+orig+".fas",dirl+dirr+"/"+orig+".table",True,limitlist = taxalist) 
  File "/home/nat/Applications/PyPHLAWD/src/get_subset_genbank_wc.py", line 134, in make_files_with_id_internal
    c.execute("select name,custom_id,custom_parent_id,custom_name from taxonomy where ncbi_id = ? and name_class = 'scientific name'",(str(taxonid),))
sqlite3.OperationalError: no such column: custom_id

Seems like maybe formatting of ncbi database has changed?

Cheers,

Nat