rrat_or_not

Here I will document how to run injections for CHIME/Pulsar filterbank files

Detections * You need the detections first to find the width\ First run CHIPSPIPE so that you have the positive_bursts_1 directory

run python ~/Documents/rrat_or_not/utils/filter_similar_bursts.py -folder_path positive_bursts_1/ -dm $DM to get a filtered folder and csv, this removed duplicate bursts
remove the rfi
run python ~/Documents/rrat_or_not/utils/create_positive_csv_edit.py filtered.csv this gives you filtered_edit.csv which is the list of bursts you should find the snr of
run python ~/Documents/rrat_or_not/injection_scripts_fluence/extract_snr.py -dm 30.996 -o B1905+39 -ds 3 -p filtered_edit.csv to extract snr (you may need to do a cp */*rfifind* . to get all the rfifind files to the directory you're working in

Injections

run move_injection_files.py python ~/rrat_or_not/injection_scripts_fluence/move_injections_files.py --path injections --gap 50
run multiple_cut.sh ~/rrat_or_not/utils/multiple_cut.sh *.fil
run fold_all_filterbank.py
run multiple_inject.sh (use -l if running locally)
run mutlple_detect.sh (use -l if runnning locally)
at the same time run run_check_single_pulse.sh (you will need the rfi statistics before doing that)
python combine_inject_stats.py *.fil

You should get an overall curve that tells you how CHIPSPIPE has done

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