diff --git a/cfpq_eval/eval_all_pairs_cflr.py b/cfpq_eval/eval_all_pairs_cflr.py
index 9c288ba..11e205e 100644
--- a/cfpq_eval/eval_all_pairs_cflr.py
+++ b/cfpq_eval/eval_all_pairs_cflr.py
@@ -58,15 +58,22 @@ def run_experiment(
             return
 
         try:
-            result = run_appropriate_all_pairs_cflr_tool(
-                algo_settings=algo_settings,
-                graph_path=graph_path,
-                grammar_path=grammar_path,
-                timeout_sec=timeout_sec
-            )
-            s_edges = result.s_edges
-            ram_kb = result.ram_kb
-            time_sec = result.time_sec
+            running_file_path = result_file_path.with_suffix('.unfinished')
+            if os.path.isfile(running_file_path) and not user_confirms_rerun():
+                s_edges, ram_kb, time_sec = "-", "-", "-"
+            else:
+                with open(running_file_path, 'w', encoding="utf-8") as running_file:
+                    running_file.write("CFPQ solver started, but has not finished")
+                result = run_appropriate_all_pairs_cflr_tool(
+                    algo_settings=algo_settings,
+                    graph_path=graph_path,
+                    grammar_path=grammar_path,
+                    timeout_sec=timeout_sec
+                )
+                s_edges = result.s_edges
+                ram_kb = result.ram_kb
+                time_sec = result.time_sec
+            os.remove(running_file_path)
         except IncompatibleCflrToolError:
             s_edges, ram_kb, time_sec = "-", "-", "-"
         except subprocess.CalledProcessError as e:
@@ -93,6 +100,20 @@ def run_experiment(
             ])
 
 
+def user_confirms_rerun() -> bool:
+    while True:
+        print(
+            "Last time you run this CFPQ solver on this input experiment was stopped abruptly "
+            "either because you stopped it manually or because container has crashed. "
+            "Do you want to rerun the CFPQ solver on this input? (y/n)"
+        )
+        user_confirm = input().lower()
+        if user_confirm == "y":
+            return True
+        if user_confirm == "n":
+            return False
+
+
 def round_to_significant_digits(x: float, digits: int = 2) -> float:
     if x == 0.0:
         return 0.0