diff --git a/.Rproj.user/E94C3793/pcs/source-pane.pper b/.Rproj.user/E94C3793/pcs/source-pane.pper
index 1743e40..9efb51b 100644
--- a/.Rproj.user/E94C3793/pcs/source-pane.pper
+++ b/.Rproj.user/E94C3793/pcs/source-pane.pper
@@ -1,3 +1,3 @@
{
- "activeTab" : 0
+ "activeTab" : -1
}
\ No newline at end of file
diff --git a/.Rproj.user/E94C3793/pcs/windowlayoutstate.pper b/.Rproj.user/E94C3793/pcs/windowlayoutstate.pper
index 580d2c2..a849448 100644
--- a/.Rproj.user/E94C3793/pcs/windowlayoutstate.pper
+++ b/.Rproj.user/E94C3793/pcs/windowlayoutstate.pper
@@ -2,7 +2,7 @@
"left" : {
"panelheight" : 685,
"splitterpos" : 285,
- "topwindowstate" : "NORMAL",
+ "topwindowstate" : "HIDE",
"windowheight" : 723
},
"right" : {
diff --git a/.Rproj.user/E94C3793/rmd-outputs b/.Rproj.user/E94C3793/rmd-outputs
index e4cc8a5..81be89a 100644
--- a/.Rproj.user/E94C3793/rmd-outputs
+++ b/.Rproj.user/E94C3793/rmd-outputs
@@ -1,4 +1,4 @@
-~/Box Sync/0. Dissertation Research/1st paper/manuscript/Tables and Figures/scripts/figure_4_s3_s4.html
+~/Box Sync/0. Dissertation Research/1st paper/manuscript/Tables and Figures/scripts/figure_3_s1_s2_s8.html
~/Box Sync/0. Dissertation Research/1st Paper/Manuscript/Tables and Figures/scripts/figure_s9_table_s6.html
~/Box Sync/0. Dissertation Research/1st Paper/Manuscript/Tables and Figures/scripts/figure_s5.html
~/Box Sync/0. Dissertation Research/1st Paper/Manuscript/Tables and Figures/scripts/figure_s9_table_s6.html
diff --git a/figures/Figure 3.jpeg b/figures/Figure 3.jpeg
index 84c189f..0511be3 100644
Binary files a/figures/Figure 3.jpeg and b/figures/Figure 3.jpeg differ
diff --git a/figures/Figure 3.pdf b/figures/Figure 3.pdf
index e153964..c835fd8 100644
Binary files a/figures/Figure 3.pdf and b/figures/Figure 3.pdf differ
diff --git a/figures/Figure S1.jpeg b/figures/Figure S1.jpeg
index 7d9be3d..b21e841 100644
Binary files a/figures/Figure S1.jpeg and b/figures/Figure S1.jpeg differ
diff --git a/figures/Figure S1.pdf b/figures/Figure S1.pdf
index c6a1bb6..e05a03f 100644
Binary files a/figures/Figure S1.pdf and b/figures/Figure S1.pdf differ
diff --git a/figures/Figure S2.jpeg b/figures/Figure S2.jpeg
index 08a79cd..9964b51 100644
Binary files a/figures/Figure S2.jpeg and b/figures/Figure S2.jpeg differ
diff --git a/figures/Figure S2.pdf b/figures/Figure S2.pdf
index eb87114..1a548ab 100644
Binary files a/figures/Figure S2.pdf and b/figures/Figure S2.pdf differ
diff --git a/figures/Figure S8.jpeg b/figures/Figure S8.jpeg
index afaf34d..cc6f31d 100644
Binary files a/figures/Figure S8.jpeg and b/figures/Figure S8.jpeg differ
diff --git a/figures/Figure S8.pdf b/figures/Figure S8.pdf
index fa8ed9f..f6d7af4 100644
Binary files a/figures/Figure S8.pdf and b/figures/Figure S8.pdf differ
diff --git a/scripts/figure_3_s1_s2_s8.Rmd b/scripts/figure_3_s1_s2_s8.Rmd
index e189a8e..0a48b9f 100644
--- a/scripts/figure_3_s1_s2_s8.Rmd
+++ b/scripts/figure_3_s1_s2_s8.Rmd
@@ -551,7 +551,7 @@ p=ggplot(p.df, aes(x=method, y=value, color=method))+
label=norm.var$label,
values = gg_color_hue(8))+
scale_shape_manual(name=NULL, values=c(1, 17))+
- labs(x="", y="Centered Deviance")+
+ labs(x="", y="Residual")+
theme_bw()+
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
diff --git a/scripts/figure_3_s1_s2_s8.html b/scripts/figure_3_s1_s2_s8.html
index 0ef49c3..468b285 100644
--- a/scripts/figure_3_s1_s2_s8.html
+++ b/scripts/figure_3_s1_s2_s8.html
@@ -10,7 +10,7 @@
-
+
Figure 3, S1, S2, S8
@@ -363,7 +363,7 @@
Figure 3, S1, S2, S8
-March 12, 2020
+March 13, 2020
@@ -496,7 +496,7 @@ 1.2 Fig. 3
legend.position = c(0.36, 0.85),
legend.direction = "horizontal", legend.box = "vertical")
p
-
+
ggsave("../figures/Figure 3.pdf", width=8.5, height=5, units='in')
ggsave("../figures/Figure 3.jpeg", width=8.5, height=5, units='in', dpi = 300)
@@ -629,7 +629,7 @@ 2.2 Fig. S1
legend.position = c(0.36, 0.85),
legend.direction = "horizontal", legend.box = "vertical")
p
-
+
ggsave("../figures/Figure S1.pdf", width=8.5, height=5, units='in')
ggsave("../figures/Figure S1.jpeg", width=8.5, height=5, units='in', dpi = 300)
@@ -762,7 +762,7 @@ 3.2 Fig. S2
legend.position = c(0.36, 0.85),
legend.direction = "horizontal", legend.box = "vertical")
p
-
+
ggsave("../figures/Figure S2.pdf", width=8.5, height=5, units='in')
ggsave("../figures/Figure S2.jpeg", width=8.5, height=5, units='in', dpi = 300)
@@ -885,7 +885,7 @@ 1.2 Fig. S8
label=norm.var$label,
values = gg_color_hue(8))+
scale_shape_manual(name=NULL, values=c(1, 17))+
- labs(x="", y="Centered Deviance")+
+ labs(x="", y="Residual")+
theme_bw()+
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
@@ -894,7 +894,7 @@ 1.2 Fig. S8
legend.position = c(0.36, 0.85),
legend.direction = "horizontal", legend.box = "vertical")
p
-
+
ggsave("../figures/Figure S8.pdf", width=8.5, height=5, units='in')
ggsave("../figures/Figure S8.jpeg", width=8.5, height=5, units='in', dpi = 300)
@@ -962,7 +962,7 @@ Session information
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
- date 2020-03-12
+ date 2020-03-13
─ Packages ───────────────────────────────────────────────────────────────────
package * version date lib source