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display gene / pseudogene history #2597

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uliboehme opened this issue Mar 22, 2021 · 2 comments
Open

display gene / pseudogene history #2597

uliboehme opened this issue Mar 22, 2021 · 2 comments

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@uliboehme
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When using the history function, pseudogenes are losing functional annotation, i.e. product description.

It would be good to have an amino acid translation for pseudogenes to help with the annotation. It would also be good to be able to see the frame when annotating pseudogenes.
@nathandunn
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Functional annotations on genes in general does not seem to be recorded, but works appropriately for mRNA. Will take a look.

@nathandunn nathandunn changed the title Pseudogenes in Apollo display gene / pseudogene history Mar 22, 2021
@nathandunn
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@uliboehme This is "correct" in that history is ONLY for transcripts even though we record it for genes. This is an interface error, but I think we should fix it in JB2 / Apollo.

@nathandunn nathandunn mentioned this issue Mar 23, 2021
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experiment looking at returning parent history GMOD/Apollo
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@nathandunn @uliboehme