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react-msaview

A multiple sequence alignment viewer

Docs

See user guide

Demo

See https://gmod.github.io/react-msaview

This page is a deployment of the app directory in this repo, which uses the react-msaview NPM package, and additionally adds the 3-D structure viewer

Screenshot

Developers

The lib folder contains the NPM package, and the app folder contains an example usage with additional wiring to use with a 3-D protein structure viewer

git clone https://github.com/GMOD/react-msaview
cd react-msaview

In one window, start a watcher for the library

cd lib
yarn tsc --watch

In another window, start the app

cd app
yarn dev

Programmatic usage, embedding, downloading from NPM

To install as a NPM package or CDN style bundle, see USAGE.md

Notes

This repo also supports https://github.com/GMOD/jbrowse-plugin-msaview which is a jbrowse 2 plugin for viewing MSAs

This repo also builds on abrowse (https://github.com/ihh/abrowse) and phylo-react (https://www.npmjs.com/package/phylo-react)