diff --git a/doc/user-guide.pdf b/doc/user-guide.pdf index b35590ab..cfeedead 100644 Binary files a/doc/user-guide.pdf and b/doc/user-guide.pdf differ diff --git a/doc/user-guide.tex b/doc/user-guide.tex index 89e1679e..7be55f4d 100644 --- a/doc/user-guide.tex +++ b/doc/user-guide.tex @@ -439,6 +439,19 @@ \subsection{\Keyword{NUMDNA}} The default value for \textit{I} is 0. +\subsection{\Keyword{NUMCARB}} +\label{numcarb} +\RDLegacyKeyword + +\noindent \Keyword{NUMCARB \textit{I}} + +specifies the number of carbohydrate residues per monomer. Only integer numbers \textit{I} should be used. Using this keyword the number and types of atoms are calculated assuming an average carbohydrate content defined as +\[ \mbox{mean sugar} = 11H + 6C + 5O \] +If a more accurate estimate is required, individual atoms may be entered explicitly with \hyperref[proteinheavyatoms]{the \Keyword{PROTEINHEAVYATOMS} keyword}. + +The default value for \textit{I} is 0. + + \subsection{\Keyword{PROTEINHEAVYATOMS}} \label{proteinheavyatoms} \RDLegacyKeyword