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GMT.jl v1.18.0 precompile failed under macOS Sonoma 14.7 #1542

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melodyjulia opened this issue Sep 25, 2024 · 16 comments
Closed

GMT.jl v1.18.0 precompile failed under macOS Sonoma 14.7 #1542

melodyjulia opened this issue Sep 25, 2024 · 16 comments

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@melodyjulia
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Please see the following error message:

ERROR: The following 1 direct dependency failed to precompile:

GMT [5752ebe1-31b9-557e-87aa-f909b540aa54]

Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/Users/test/.julia/compiled/v1.10/GMT/jl_IEFmYy".
grdimage [ERROR]: Option -R parsing failure. Correct syntax:

  -R<west>/<east>/<south>/<north>[+r]
     Specify the min/max coordinates of your data region in user units. Use dd:mm[:ss] for regions given in arc degrees, minutes [and seconds]. Use -R<xmin>/<xmax>/<ymin>/<ymax>[+u<unit>] for regions given in projected coordinates, with <unit>
     selected from e|f|k|M|n|u [Default: e]. If +u is set, projected regions centered on (0,0) may be set via -R<halfwidth>[/<halfheight>]+u<unit>, where <halfheight> defaults to <halfwidth> if not given. Use [yyyy[-mm[-dd]]]T[hh[:mm[:ss[.xxx]]]]
     format for time axes. Append +r if -R specifies the coordinates of the lower left and upper right corners of a rectangular area.
     Alternatively, use -R<code><x0>/<y0>/<n_columns>/<n_rows> for origin and grid dimensions, where <code> is a 2-char combo from [T|M|B][L|C|R] (top/middle/bottom/left/center/right) and grid spacing must be specified via -I<dx>[/<dy>] (also see
     -r).
grdimage [ERROR]: Offending option -R32/1.976262583365e-323/3.024720436637e-314/1.976262583365e-323
ERROR: LoadError: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/gmt_main.jl:170
  [3] finish_PS_module(::Dict{Symbol, Any}, ::Vector{String}, ::String, ::Bool, ::Bool, ::Bool, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/common_options.jl:4449
  [4] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{})
    @ GMT ~/.julia/packages/GMT/XumeP/src/grdimage.jl:145
  [5] grdimage
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:51 [inlined]
  [6] grdimage (repeats 2 times)
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:225 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:352 [inlined]
  [8] macro expansion
    @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined]
  [9] top-level scope
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:332
 [10] include
    @ ./Base.jl:495 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [12] top-level scope
    @ stdin:3
@melodyjulia melodyjulia changed the title GMT.jl v1.18 precompile failed on macOS Sonoma 14.7 GMT.jl v1.18 precompile failed under macOS Sonoma 14.7 Sep 25, 2024
@melodyjulia melodyjulia changed the title GMT.jl v1.18 precompile failed under macOS Sonoma 14.7 GMT.jl v1.18.0 precompile failed under macOS Sonoma 14.7 Sep 25, 2024
@joa-quim
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Sorry for that. But it is most weird. I've run the CI tests many times and they all build fine on MacOS too. Can you please try the master version to see if the problem persists?

@melodyjulia
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yes, the master version also fails.

[5752ebe1] GMT v1.18.0 `https://github.com/GenericMappingTools/GMT.jl#master`

ERROR: The following 1 direct dependency failed to precompile:

GMT [5752ebe1-31b9-557e-87aa-f909b540aa54]

Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/Users/test/.julia/compiled/v1.10/GMT/jl_cB66kl".
grdimage [ERROR]: Option -R parsing failure. Correct syntax:

  -R<west>/<east>/<south>/<north>[+r]
     Specify the min/max coordinates of your data region in user units. Use dd:mm[:ss] for regions given in arc degrees, minutes [and seconds]. Use -R<xmin>/<xmax>/<ymin>/<ymax>[+u<unit>] for regions given in projected coordinates, with <unit> selected from e|f|k|M|n|u [Default: e]. If +u is set, projected regions centered on (0,0) may be set via -R<halfwidth>[/<halfheight>]+u<unit>, where <halfheight> defaults to <halfwidth> if not given. Use [yyyy[-mm[-dd]]]T[hh[:mm[:ss[.xxx]]]] format for time axes. Append +r if -R specifies the coordinates of the lower left and upper right corners of a rectangular area.
     Alternatively, use -R<code><x0>/<y0>/<n_columns>/<n_rows> for origin and grid dimensions, where <code> is a 2-char combo from [T|M|B][L|C|R] (top/middle/bottom/left/center/right) and grid spacing must be specified via -I<dx>[/<dy>] (also see -r).
grdimage [ERROR]: Offending option -R32/1.976262583365e-323/3.0137358079401e-314/1.976262583365e-323
ERROR: LoadError: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/kzp1T/src/gmt_main.jl:170
  [3] finish_PS_module(::Dict{Symbol, Any}, ::Vector{String}, ::String, ::Bool, ::Bool, ::Bool, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/kzp1T/src/common_options.jl:4449
  [4] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{})
    @ GMT ~/.julia/packages/GMT/kzp1T/src/grdimage.jl:145
  [5] grdimage
    @ ~/.julia/packages/GMT/kzp1T/src/grdimage.jl:51 [inlined]
  [6] grdimage (repeats 2 times)
    @ ~/.julia/packages/GMT/kzp1T/src/grdimage.jl:225 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/GMT/kzp1T/src/GMT.jl:357 [inlined]
  [8] macro expansion
    @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined]
  [9] top-level scope
    @ ~/.julia/packages/GMT/kzp1T/src/GMT.jl:337
 [10] include
    @ ./Base.jl:495 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [12] top-level scope
    @ stdin:3

@joa-quim
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joa-quim commented Sep 26, 2024 •
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Hmm, there is something to learn form this failure example. As I ssaid the CI tests run fine on MacOS so this has to be something local.

Can you check if you have these files, gmt.conf and/or gmt.history in the directory from which you are running julia when the error occurs, and if yes delete them and try again.

@melodyjulia
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melodyjulia commented Sep 26, 2024 •
edited
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There is no gmt.conf, but gmt.history does exist. I deleted gmt.history and tried again, precompile fails with the same error message.

@joa-quim
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OK, I changed slightly the precompiling command that is failing (added a explicit limits option) and committed it. Try updating again. It should not fail for the same reason, but who knows what it can invent now.

@melodyjulia
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It works now. Thank you very much!
By the way, is it possible that this is related to macOS running on an ARM core?

@joa-quim
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I have no idea at all why it fails only for you (that I know of) and would like to find the cause but I'm afraid that for now only you can do it (this error may resurface again under other circumstances).

Does this now works or it gives a similar error?

grdimage(rand(Float32,32,32))

@melodyjulia
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melodyjulia commented Sep 27, 2024 •
edited
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No, it does not work:

makecpt [ERROR]: Option T: min >= max
ERROR: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String)
    @ GMT ~/.julia/packages/GMT/kHXP0/src/gmt_main.jl:170
  [3] (::GMT.var"#equalize#249")(d::Dict{Symbol, Any}, arg1::GMTgrid{Float32, 2}, cptname::String, opt_T::String)
    @ GMT ~/.julia/packages/GMT/kHXP0/src/common_options.jl:2561
  [4] add_opt_cpt(d::Dict{…}, cmd::String, symbs::Matrix{…}, opt::Char, N_args::Int64, arg1::GMTgrid{…}, arg2::Nothing, store::Bool, def::Bool, opt_T::String, in_bag::Bool)
    @ GMT ~/.julia/packages/GMT/kHXP0/src/common_options.jl:2594
  [5] get_cpt_set_R(d::Dict{Symbol, Any}, cmd0::String, cmd::String, opt_R::String, got_fname::Int64, arg1::GMTgrid{Float32, 2}, arg2::Nothing, arg3::Nothing, prog::String)
    @ GMT ~/.julia/packages/GMT/kHXP0/src/common_options.jl:2733
  [6] common_get_R_cpt
    @ ~/.julia/packages/GMT/kHXP0/src/common_options.jl:4883 [inlined]
  [7] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{})
    @ GMT ~/.julia/packages/GMT/kHXP0/src/grdimage.jl:117
  [8] grdimage
    @ ~/.julia/packages/GMT/kHXP0/src/grdimage.jl:51 [inlined]
  [9] grdimage
    @ ~/.julia/packages/GMT/kHXP0/src/grdimage.jl:225 [inlined]
 [10] grdimage(arg1::Matrix{Float32})
    @ GMT ~/.julia/packages/GMT/kHXP0/src/grdimage.jl:225
 [11] top-level scope
    @ REPL[1]:1
Some type information was truncated. Use `show(err)` to see complete types.

@ZMAlt
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ZMAlt commented Sep 27, 2024

Hi, both. There is also a precompile error in my private repo CI. I think it's related to this issue. The report is as follows.

OS of CI: macos lastest.

Error: image [ERROR]: Option -R parsing failure. Correct syntax:

  -R<west>/<east>/<south>/<north>[+r]
     Specify the min/max coordinates of your data region in user units. Use dd:mm[:ss] for regions given in arc degrees, minutes [and seconds]. Use -R<xmin>/<xmax>/<ymin>/<ymax>[+u<unit>] for regions given in projected coordinates, with <unit> selected from e|f|k|M|n|u [Default: e]. If +u is set, projected regions centered on (0,0) may be set via -R<halfwidth>[/<halfheight>]+u<unit>, where <halfheight> defaults to <halfwidth> if not given. Use [yyyy[-mm[-dd]]]T[hh[:mm[:ss[.xxx]]]] format for time axes. Append +r if -R specifies the coordinates of the lower left and upper right corners of a rectangular area.
     Alternatively, use -R<code><x0>/<y0>/<n_columns>/<n_rows> for origin and grid dimensions, where <code> is a 2-char combo from [T|M|B][L|C|R] (top/middle/bottom/left/center/right) and grid spacing must be specified via -I<dx>[/<dy>] (also see -r).
Error: image [ERROR]: Offending option -R32/1.976262583365e-323/3.0318073854064e-314/1.976262583365e-323
ERROR: LoadError: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/gmt_main.jl:170
  [3] finish_PS_module(::Dict{Symbol, Any}, ::Vector{String}, ::String, ::Bool, ::Bool, ::Bool, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/common_options.jl:4449
  [4] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{})
    @ GMT ~/.julia/packages/GMT/XumeP/src/grdimage.jl:145
  [5] grdimage
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:51 [inlined]
  [6] grdimage (repeats 2 times)
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:225 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:352 [inlined]
  [8] macro expansion
    @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined]
  [9] top-level scope
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:332
 [10] include
    @ ./Base.jl:495 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2222
 [12] top-level scope
    @ stdin:3
in expression starting at /Users/runner/.julia/packages/GMT/XumeP/src/GMT.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/Users/runner/.julia/compiled/v1.10/GMT/jl_NSvxDa".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2468
  [3] compilecache
    @ ./loading.jl:2340 [inlined]
  [4] (::Base.var"#968#969"{Base.PkgId})()
    @ Base ./loading.jl:1974
  [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93
  [6] #mkpidlock#6
    @ ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined]
  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111
  [8] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [9] invokelatest
    @ ./essentials.jl:889 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:2983
 [11] maybe_cachefile_lock
    @ ./loading.jl:2980 [inlined]
 [12] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1970
 [13] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [14] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [15] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [16] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [17] macro expansion
    @ ./loading.jl:1790 [inlined]
 [18] macro expansion
    @ ./lock.jl:267 [inlined]
 [19] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [20] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [21] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [22] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [23] include
    @ ./Base.jl:495 [inlined]
 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [25] top-level scope
    @ stdin:3
in expression starting at /Users/runner/work/Project/Project/GeoSubs/src/GeoSubs.jl:1
in expression starting at stdin:3
  ✗ GeoSubs
  95 dependencies successfully precompiled in 72 seconds. 8 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

GeoSubs [d0309c17-d891-4dc0-a6e9-907595b5e534]

Failed to precompile GeoSubs [d0309c17-d891-4dc0-a6e9-907595b5e534] to "/Users/runner/.julia/compiled/v1.10/GeoSubs/jl_aojIpT".
Error: e [ERROR]: Option -R parsing failure. Correct syntax:

  -R<west>/<east>/<south>/<north>[+r]
     Specify the min/max coordinates of your data region in user units. Use dd:mm[:ss] for regions given in arc degrees, minutes [and seconds]. Use -R<xmin>/<xmax>/<ymin>/<ymax>[+u<unit>] for regions given in projected coordinates, with <unit> selected from e|f|k|M|n|u [Default: e]. If +u is set, projected regions centered on (0,0) may be set via -R<halfwidth>[/<halfheight>]+u<unit>, where <halfheight> defaults to <halfwidth> if not given. Use [yyyy[-mm[-dd]]]T[hh[:mm[:ss[.xxx]]]] format for time axes. Append +r if -R specifies the coordinates of the lower left and upper right corners of a rectangular area.
     Alternatively, use -R<code><x0>/<y0>/<n_columns>/<n_rows> for origin and grid dimensions, where <code> is a 2-char combo from [T|M|B][L|C|R] (top/middle/bottom/left/center/right) and grid spacing must be specified via -I<dx>[/<dy>] (also see -r).
Error: e [ERROR]: Offending option -R32/1.976262583[365](https://github.com/ZMAlt/Project/actions/runs/11030713129/job/30635888040?pr=34#step:4:366)e-323/3.0318073854064e-314/1.976262583365e-323
ERROR: LoadError: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/gmt_main.jl:170
  [3] finish_PS_module(::Dict{Symbol, Any}, ::Vector{String}, ::String, ::Bool, ::Bool, ::Bool, ::GMT.GMTgrid{Float32, 2}, ::Vararg{Any})
    @ GMT ~/.julia/packages/GMT/XumeP/src/common_options.jl:4449
  [4] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{})
    @ GMT ~/.julia/packages/GMT/XumeP/src/grdimage.jl:145
  [5] grdimage
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:51 [inlined]
  [6] grdimage (repeats 2 times)
    @ ~/.julia/packages/GMT/XumeP/src/grdimage.jl:225 [inlined]
  [7] macro expansion
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:352 [inlined]
  [8] macro expansion
    @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined]
  [9] top-level scope
    @ ~/.julia/packages/GMT/XumeP/src/GMT.jl:332
 [10] include
    @ ./Base.jl:495 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2222
 [12] top-level scope
    @ stdin:3
in expression starting at /Users/runner/.julia/packages/GMT/XumeP/src/GMT.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/Users/runner/.julia/compiled/v1.10/GMT/jl_NSvxDa".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2468
  [3] compilecache
    @ ./loading.jl:2340 [inlined]
  [4] (::Base.var"#968#969"{Base.PkgId})()
    @ Base ./loading.jl:1974
  [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93
  [6] #mkpidlock#6
    @ ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined]
  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111
  [8] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [9] invokelatest
    @ ./essentials.jl:889 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:2983
 [11] maybe_cachefile_lock
    @ ./loading.jl:2980 [inlined]
 [12] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1970
 [13] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [14] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [15] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [16] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [17] macro expansion
    @ ./loading.jl:1790 [inlined]
 [18] macro expansion
    @ ./lock.jl:267 [inlined]
 [19] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [20] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [21] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [22] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [23] include
    @ ./Base.jl:495 [inlined]
 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [25] top-level scope
    @ stdin:3
in expression starting at /Users/runner/work/Project/Project/GeoSubs/src/GeoSubs.jl:1
in expression starting at stdin:
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70
 [2] precompile(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, _from_loading::Bool, kwargs::@Kwargs{io::IOContext{Base.PipeEndpoint}})
   @ Pkg.API ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/API.jl:1700
 [3] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{Base.PipeEndpoint}, kwargs::@Kwargs{})
   @ Pkg.API ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
 [4] precompile(pkgs::Vector{Pkg.Types.PackageSpec})
   @ Pkg.API ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/API.jl:148
 [5] precompile
   @ ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
 [6] precompile(pkg::String)
   @ Pkg.API ~/hostedtoolcache/julia/1.10.5/aarch64/share/julia/stdlib/v1.10/Pkg/src/API.jl:146
 [7] top-level scope
   @ ~/work/_temp/5c6a7573-190d-[407](https://github.com/ZMAlt/Project/actions/runs/11030713129/job/30635888040?pr=34#step:4:408)0-977b-958f2cf09d53:21
in expression starting at /Users/runner/work/_temp/5c6a7573-190d-4070-977b-958f2cf09d53:19
Error: Process completed with exit code 1.

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joa-quim commented Sep 27, 2024 via email

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ZMAlt commented Sep 27, 2024

Something is wrong in these lines, but I don't know why.

GMT.jl/src/common_options.jl

Lines 2699 to 2701 in 95a6da2

if (opt_R == "" && (!IamModern[1] || (IamModern[1] && FirstModern[1])) ) # No -R ovewrite by accident
cmd *= sprintf(" -R%.14g/%.14g/%.14g/%.14g", range[1], range[2], range[3], range[4])
end 

julia> grdimage(rand(Float32,32,32))
(range, cmd) = ([1.0, 32.0, 1.0, 32.0, 0.0007270574569702148, 0.9993302226066589], " -JX15c/0 -Baf -BWSen -n+a")
cmd = " -JX15c/0 -Baf -BWSen -n+a -R32/3.0491549511702e-314/0/3.0785113476674e-314"

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No, that is not the original problem. That error happens when makecpt tries to make color map out of a nonsense limits.
The problem is that in the failing cases you don't get this as it should be

grdimage(rand(Float32,32,32), Vd=2)
"grdimage  -JX15c/0 -Baf -BWSen -n+a -R1/32/1/32 -C -P -K > c:\\TMP/GMTjl_j.ps"

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Can you please see what happen at this line?
https://github.com/GenericMappingTools/GMT.jl/blob/master/src/utils_types.jl#L2166

The error originates in the fact that it's failing to generate the right x,y coordinate vectors. Here both nx and ny should be equal to 32.

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ZMAlt commented Sep 29, 2024

This line is good.

julia> grdimage(rand(Float32,32,32), Vd=2)
(nx, ny) = (32, 32)
x = [1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 18.0, 19.0, 20.0, 21.0, 22.0, 23.0, 24.0, 25.0, 26.0, 27.0, 28.0, 29.0, 30.0, 31.0, 32.0]
y = [1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0, 17.0, 18.0, 19.0, 20.0, 21.0, 22.0, 23.0, 24.0, 25.0, 26.0, 27.0, 28.0, 29.0, 30.0, 31.0, 32.0]
(range, cmd) = ([1.0, 32.0, 1.0, 32.0, 0.0007783174514770508, 0.997594952583313], " -JX15c/0 -Baf -BWSen -n+a")
cmd = " -JX15c/0 -Baf -BWSen -n+a -R32/3.0454798774601e-314/0/3.1242331785699e-314"
(cmd, "34") = (" -JX15c/0 -Baf -BWSen -n+a -R32/3.0454798774601e-314/0/3.1242331785699e-314", "34")
makecpt [ERROR]: Option T: min >= max
ERROR: Something went wrong when calling the module. GMT error number = 72
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] gmt(::String)
    @ GMT ~/.julia/dev/GMT/src/gmt_main.jl:170
  [3] (::GMT.var"#equalize#249")(d::Dict{Symbol, Any}, arg1::GMTgrid{Float32, 2}, cptname::String, opt_T::String)
    @ GMT ~/.julia/dev/GMT/src/common_options.jl:2561
  [4] add_opt_cpt(d::Dict{Symbol, Any}, cmd::String, symbs::Matrix{Symbol}, opt::Char, N_args::Int64, arg1::GMTgrid{Float32, 2}, arg2::Nothing, store::Bool, def::Bool, opt_T::String, in_bag::Bool)
    @ GMT ~/.julia/dev/GMT/src/common_options.jl:2594
  [5] get_cpt_set_R(d::Dict{Symbol, Any}, cmd0::String, cmd::String, opt_R::String, got_fname::Int64, arg1::GMTgrid{Float32, 2}, arg2::Nothing, arg3::Nothing, prog::String)
    @ GMT ~/.julia/dev/GMT/src/common_options.jl:2736
  [6] common_get_R_cpt
    @ ~/.julia/dev/GMT/src/common_options.jl:4886 [inlined]
  [7] grdimage(cmd0::String, arg1::Matrix{Float32}, arg2::Nothing, arg3::Nothing; first::Bool, kwargs::@Kwargs{Vd::Int64})
    @ GMT ~/.julia/dev/GMT/src/grdimage.jl:117
  [8] grdimage
    @ ~/.julia/dev/GMT/src/grdimage.jl:51 [inlined]
  [9] grdimage
    @ ~/.julia/dev/GMT/src/grdimage.jl:225 [inlined]
 [10] top-level scope
    @ REPL[3]:1

(gmt_test) pkg> st
Status `~/Desktop/gmt_test/Project.toml`
  [5752ebe1] GMT v1.18.0 `~/.julia/dev/GMT`

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ZMAlt commented Sep 29, 2024 •
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I think the original problem is about sprintf function. This function produces wrong results of -R and -T options.
If I replace this funciton with @sprintf of Printf package, it works.

@ZMAlt ZMAlt mentioned this issue Sep 29, 2024
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@joa-quim
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Fixed.

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