You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello! Unfortunately we haven't implemented an easy way to do this, and the %id histogram in the output report is based on the BBmap summary output. The SAM mapping file can be parsed to give the %id. Relevant SAM tag is the NM tag, which is the total number of mismatches + indels relative to the reference. Important to note is which definition of %id you choose to work with; there is a summary of different alternatives e.g. in the Vsearch documentation, look for the iddef parameter. Hope that this helps!
-- Brandon
Hi @kbseah ,
is there a way for me to find out the alignment identity between individual reads and their closest database hit from the output files?
Thanks!
Josephine
The text was updated successfully, but these errors were encountered: