diff --git a/psi-ms.obo b/psi-ms.obo index e0d7e1c..a5f20b9 100644 --- a/psi-ms.obo +++ b/psi-ms.obo @@ -1,7 +1,7 @@ format-version: 1.2 -data-version: 4.1.85 +data-version: 4.1.86 date: 27:04:2022 12:51 -saved-by: Yasset Perez-Riverol +saved-by: Joshua Klein auto-generated-by: OBO-Edit 2.3.1 import: http://purl.obolibrary.org/obo/pato.obo import: http://purl.obolibrary.org/obo/uo.obo @@ -22419,6 +22419,123 @@ name: Xevo G2-XS QTof def: "Waters Corporation Xevo G2-XS QTof quadrupole time-of-flight mass spectrometer." [PSI:PI] is_a: MS:1000126 ! Waters instrument model +[Term] +id: MS:1003253 +name: DIA-NN +def: "A universal software for data-independent acquisition (DIA) proteomics data processing" [PMID:31768060, https://github.com/vdemichev/DiaNN] +is_a: MS:1001139 ! quantitation software name +is_a: MS:1001456 ! analysis software + +[Term] +id: MS:1003254 +name: peak attribute +def: "An attribute of a peak in a mass spectrum other than its m/z, intensity, and annotation. " [PSI:PI] +relationship: part_of MS:1000231 ! peak + +[Term] +id: MS:1003255 +name: pre-decharged charge state +def: "For a de-charged spectrum, the original charge state of the ion observed in a mass spectrum determined by charge deconvolution. " [PSI:PI] +is_a: MS:1003254 ! peak attribute + +[Term] +id: MS:1003256 +name: peptidoform ion attribute +def: "Non-inherent characteristic attributed to a peptidoform" [PSI:PI] +relationship: part_of MS:1003051 ! peptidoform ion + +[Term] +id: MS:1003257 +name: library spectrum cross reference +def: "A link from one spectrum to another spectrum of interest " [PSI:PI] +is_a: MS:1003234 ! library entry attribute + +[Term] +id: MS:1003258 +name: related spectrum +def: "A cross reference to another spectrum that has some relationship with this one, but is not necessarily spectrally similar. " [PSI:PI] +is_a: MS:1003257 ! library spectrum cross reference + +[Term] +id: MS:1003259 +name: related spectrum keys +def: "A list of cross references to a related spectrum in the same library, in the form of the library entry key. " [PSI:PI] +is_a: MS:1003258 ! related spectrum +relationship: has_value_type MS:1002712 ! The allowed value-type for this CV term + +[Term] +id: MS:1003260 +name: related spectrum USI +def: "A cross reference to a related spectrum in the form of a PSI Universal Spectrum Identifier" [PSI:PI] +is_a: MS:1003258 ! related spectrum +relationship: has_value_type xsd\:string ! The allowed value-type for this CV term + +[Term] +id: MS:1003261 +name: related spectrum description +def: "A free-text string describing the related spectrum and/or its relationship to this spectrum" [PSI:PI] +relationship: part_of MS:1003258 ! related spectrum +relationship: has_value_type xsd\:string ! The allowed value-type for this CV term + +[Term] +id: MS:1003262 +name: similar spectrum +def: "A cross reference to another spectrum that has high spectral similarity with this one, usually assumed to originate from the same analyte ion." [PSI:PI] +is_a: MS:1003257 ! library spectrum cross reference + +[Term] +id: MS:1003263 +name: similar spectrum keys +def: "A list of cross references to a similar spectrum in the same library, in the form of the library entry key. " [PSI:PI] +is_a: MS:1003262 ! similar spectrum +relationship: has_value_type MS:1002712 ! The allowed value-type for this CV term + +[Term] +id: MS:1003264 +name: similar spectrum USI +def: "A cross reference to a similar spectrum in the form of a PSI Universal Spectrum Identifier" [PSI:PI] +is_a: MS:1003262 ! similar spectrum +relationship: has_value_type xsd\:string ! The allowed value-type for this CV term + +[Term] +id: MS:1003265 +name: spectrum cluster +def: "A group of spectra that are spectrally similar to each other" [PSI:PI] +relationship: part_of MS:1003170 ! spectral library + +[Term] +id: MS:1003266 +name: spectrum cluster attribute +def: "A non-inherent characteristic of a spectrum cluster" [PSI:PI] +relationship: part_of MS:1003265 ! spectrum cluster + +[Term] +id: MS:1003267 +name: spectrum cluster key +def: "An ordinal number uniquely identifying a spectrum cluster. It should start with 1." [PSI:PI] +is_a: MS:1003266 ! spectrum cluster attribute +relationship: has_value_type xsd\:integer ! The allowed value-type for this CV term + +[Term] +id: MS:1003268 +name: spectrum cluster member spectrum keys +def: "A list of integers corresponding to the library entry keys of the members of this cluster. These members must be in the same library." [PSI:PI] +is_a: MS:1003266 ! spectrum cluster attribute +relationship: has_value_type MS:1002712 ! The allowed value-type for this CV term + +[Term] +id: MS:1003269 +name: spectrum cluster member USI +def: "A member of this cluster external to the library, specified using a PSI Universal Spectrum Identifier " [PSI:PI] +is_a: MS:1003266 ! spectrum cluster attribute +relationship: has_value_type xsd\:string ! The allowed value-type for this CV term + +[Term] +id: MS:1003270 +name: proforma peptidoform ion notation +def: "A string describing the peptidoform ion using the PSI ProForma notation, which should include the charge state, and optionally the adduct type. " [PSI:PI] +is_a: MS:1003256 ! peptidoform ion attribute + [Term] id: MS:4000000 name: PSI-MS CV Quality Control Vocabulary @@ -22938,13 +23055,6 @@ relationship: has_optional_column MS:1001844 ! MS1 feature area relationship: has_optional_column MS:1001843 ! MS1 feature maximum intensity relationship: has_optional_column MS:1003085 ! previous MSn-1 scan precursor intensity -[Term] -id: MS:1003253 -name: DIA-NN -def: "A universal software for data-independent acquisition (DIA) proteomics data processing" [PMID:31768060, https://github.com/vdemichev/DiaNN] -is_a: MS:1001139 ! quantitation software name -is_a: MS:1001456 ! analysis software - [Term] id: PEFF:0000001 name: PEFF CV term