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about the af_cluster input #11

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chasezhu opened this issue Dec 22, 2023 · 0 comments
Open

about the af_cluster input #11

chasezhu opened this issue Dec 22, 2023 · 0 comments

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@chasezhu
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Dear all,
Sadly, website of colabfold is unaccessable in my country. Therefor,
Would you mind offering the independent MMseqs code for generating the AF_Cluster msa input,which likes

mmseqs search /home/zhu/afcluster/test/queryDB /home/zhu/alphafold-2.3.2/db/uniclust30/mmseqsdb/UniRef30_db ./ tmp --threads 48 --num-iterations 3 -a -e 0.1 --max-seqs 10000 --db-load-mode 0

P.S. The code above is inferred from your article, by the way, really nice work.

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