INSTALL

# get to your target folder and git the respository

git clone https://github.com/schneebergerlab/GameteBinning_tetraploid.git

# install library dependency. Note: this needs c library [zlib.h](https://github.com/madler/zlib)

cd GameteBinnin_tetraploid
cd dependency_src_gzstream/

make clean
make

cp libgzstream.a ../src_depth_hist_sliding_window/gzlib/
cp libgzstream.a ../src_asCellseparator/gzlib
cp libgzstream.a ../src_as10xbamFqer/gzlib
cp libgzstream.a ../src_10x_barcode_trimmer/gzlib

cd ..

# install tools

srcall=`echo src_*/`
for src in ${srcall}; do cd ./${src}; make; cd ..; done

# add the dev_bin to your environmental PATH variable.

cwp=`pwd`
export PATH=${cwp}/dev_bin:$PATH