[Cluster Sources] Cluster Transcriptomic and Proteomic Sources

[JoshLoecker]

Clustering transcriptomic and proteomic sources together can give a better view of the quality of each type of source

This file will cluster transcriptomic and proteomic sources
It will perform the following functions

• Read zFPKM (or TPMs/CPMs) for each replicate

• • Binarize them if the argument is given. See RNAseq.R using the kOverA function

• Cluster all replicates for all studies across all contexts within one data source
• Clusters all replicates for all batches/studies across all data sources within one cell type at a time
• Clusters all batches/studies across all contexts/cell types within one data source at a time
• Clusters all batches/studies across all data sources within one cell type at a time (edited)