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Stardist 2D prediction error output , 1000*1000 with 16bit #257

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mdoaskndfweon opened this issue Apr 1, 2023 · 1 comment
Open

Stardist 2D prediction error output , 1000*1000 with 16bit #257

mdoaskndfweon opened this issue Apr 1, 2023 · 1 comment

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@mdoaskndfweon
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          hello, sorry for that confusing , I had already solve above those problem, but I have question relate my result for the nuclei segmentation , suppose that input image size is 1000,

Screenshot 2023-04-01 at 6 42 41 PM

this is the test result ,

Screenshot 2023-04-01 at 6 43 42 PM

for example , right hand side of the grapth is segmentation result, but when I try to predict new image without label,

Screenshot 2023-04-01 at 6 45 31 PM

the result are showed below
Screenshot 2023-04-01 at 6 45 07 PM
you see, totally differnt from the test data, but i want the format look like the same for the test data format.

my input block size x and y is 756, min overlap is256, When I decrease of block size or decrease of lin overlap, it show error and can't output the grapth

Originally posted by @mdoaskndfweon in #256 (comment)

@guijacquemet
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Hi,
Thanks for reaching out!
I am not sure I understand your question.
What do you mean by "!suppose that input image size is 1000" ?

Cheers
Guillaume

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