diff --git a/tests/isatab/test_isatab.py b/tests/isatab/test_isatab.py index 8ecde0bd..1e249e50 100644 --- a/tests/isatab/test_isatab.py +++ b/tests/isatab/test_isatab.py @@ -130,7 +130,6 @@ def test_isatab_dump_source_sample_split(self): f = StudyFactor(name="treatment['modality']", factor_type=OntologyAnnotation(term="treatment[modality]")) f.comments.append(Comment(name="Study Start Date", value="Moon")) s.factors.append(f) - print("Factors: ", f) reference_descriptor_category = OntologyAnnotation(term='reference descriptor') material_type_category = OntologyAnnotation(term='Material Type') @@ -971,7 +970,7 @@ def test_isatab_load_bii_i_1(self): self.assertEqual(len(assay_transcriptome.samples), 48) # 48 assay samples in a_transcriptome.txt self.assertEqual(len(assay_transcriptome.other_material), 96) # 96 other materials in a_transcriptome.txt self.assertEqual(len(assay_transcriptome.data_files), 49) # 49 data files in a_transcriptome.txt - self.assertEqual(len(assay_transcriptome.process_sequence), 194) # 194 processes in in a_transcriptome.txt + self.assertEqual(len(assay_transcriptome.process_sequence), 193) # 193 processes in in a_transcriptome.txt study_bii_s_2 = [s for s in ISA.studies if s.filename == 's_BII-S-2.txt'][0] @@ -987,7 +986,7 @@ def test_isatab_load_bii_i_1(self): self.assertEqual(len(assay_microarray.samples), 2) # 2 assay samples in a_microarray.txt self.assertEqual(len(assay_microarray.other_material), 28) # 28 other materials in a_microarray.txt self.assertEqual(len(assay_microarray.data_files), 15) # 15 data files in a_microarray.txt - self.assertEqual(len(assay_microarray.process_sequence), 46) # 46 processes in in a_microarray.txt + self.assertEqual(len(assay_microarray.process_sequence), 45) # 45 processes in in a_microarray.txt def test_isatab_load_bii_s_3(self): with open(os.path.join(self._tab_data_dir, 'BII-S-3', 'i_gilbert.txt')) as fp: