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I personally compared the GATK best-practices pipeline with DRAGEN-GATK using a mock-dataset and the DRAGEN pipeline had the same recall but a lower precision.
In my case, I had a substantially lower number of duplicates after duplicate marking when I used DRAGMAP for the alignment and haven't figured out yet why this is the case.
Hi,
While Dragmap is freely available, is the rest of the Dragen software also? Is it possible to download the software that performs the variant calling?
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