diff --git a/fasta_mask/hg19_alt_mask_v2.bed b/fasta_mask/hg19_alt_mask_v2.bed new file mode 100644 index 0000000..4dee614 --- /dev/null +++ b/fasta_mask/hg19_alt_mask_v2.bed @@ -0,0 +1,680 @@ +chr4_ctg9_hap1 0 590426 +chr6_apd_hap1 0 207807 +chr6_apd_hap1 252060 327074 +chr6_apd_hap1 356478 448574 +chr6_apd_hap1 536192 588761 +chr6_apd_hap1 692973 868085 +chr6_apd_hap1 868113 944435 +chr6_apd_hap1 963578 970040 +chr6_apd_hap1 1029437 1173934 +chr6_apd_hap1 1198548 1238363 +chr6_apd_hap1 1238680 1307951 +chr6_apd_hap1 1317697 1341205 +chr6_apd_hap1 1344139 1451581 +chr6_apd_hap1 1556192 1582549 +chr6_apd_hap1 1598989 1736596 +chr6_apd_hap1 1786349 1833811 +chr6_apd_hap1 1937702 2009922 +chr6_apd_hap1 2164482 2169002 +chr6_apd_hap1 2254169 2292669 +chr6_apd_hap1 2292841 2304095 +chr6_apd_hap1 2304120 2321204 +chr6_apd_hap1 2323249 2324389 +chr6_apd_hap1 2324891 2359974 +chr6_apd_hap1 2761254 2821649 +chr6_apd_hap1 2858451 2894657 +chr6_apd_hap1 3037482 3122973 +chr6_apd_hap1 3136480 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10180 +chr2_KI270894v1_alt 27280 27597 +chr2_KI270894v1_alt 29620 29993 +chr2_KI270894v1_alt 31340 77840 +chr2_KI270894v1_alt 77960 78840 +chr2_KI270894v1_alt 79060 79800 +chr2_KI270894v1_alt 80100 81420 +chr2_KI270894v1_alt 81600 82020 +chr2_KI270894v1_alt 82160 82460 +chr2_KI270894v1_alt 82640 84460 +chr2_KI270894v1_alt 84800 86040 +chr2_KI270894v1_alt 86360 87800 +chr2_KI270894v1_alt 87920 88660 +chr2_KI270894v1_alt 89120 89420 +chr2_KI270894v1_alt 89500 90396 +chr2_KI270894v1_alt 90620 91880 +chr2_KI270894v1_alt 92140 93620 +chr2_KI270894v1_alt 93660 94260 +chr2_KI270894v1_alt 94360 94671 +chr2_KI270894v1_alt 95920 96620 +chr2_KI270894v1_alt 97320 97720 +chr2_KI270894v1_alt 102620 103032 +chr2_KI270894v1_alt 103940 104291 +chr2_KI270894v1_alt 104780 105380 +chr2_KI270894v1_alt 105960 106260 +chr2_KI270894v1_alt 106900 107228 +chr2_KI270894v1_alt 111560 112340 +chr2_KI270894v1_alt 112560 113060 +chr2_KI270894v1_alt 113160 113500 +chr2_KI270894v1_alt 113560 114100 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145700 146660 +chr2_KI270894v1_alt 146920 147820 +chr2_KI270894v1_alt 147920 148960 +chr2_KI270894v1_alt 149080 149380 +chr2_KI270894v1_alt 150060 151360 +chr2_KI270894v1_alt 151720 152280 +chr2_KI270894v1_alt 153320 153980 +chr2_KI270894v1_alt 154400 155000 +chr2_KI270894v1_alt 155100 159520 +chr2_KI270894v1_alt 160100 160760 +chr2_KI270894v1_alt 160840 161140 +chr2_KI270894v1_alt 161700 162020 +chr2_KI270894v1_alt 162100 162480 +chr2_KI270894v1_alt 162780 163480 +chr2_KI270894v1_alt 163960 214158 +chr3_GL383526v1_alt 0 75366 +chr3_GL383526v1_alt 85940 180671 +chr3_JH636055v2_alt 0 115986 +chr3_JH636055v2_alt 117840 173151 +chr3_KI270777v1_alt 0 101431 +chr3_KI270777v1_alt 104460 173649 +chr3_KI270778v1_alt 0 53815 +chr3_KI270778v1_alt 58640 248252 +chr3_KI270779v1_alt 0 205312 +chr3_KI270780v1_alt 0 100913 +chr3_KI270780v1_alt 102280 104180 +chr3_KI270780v1_alt 106280 224108 +chr3_KI270781v1_alt 0 94472 +chr3_KI270781v1_alt 99300 113034 +chr3_KI270782v1_alt 0 162429 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324500 325240 +chr4_KI270925v1_alt 325460 327180 +chr4_KI270925v1_alt 327340 332160 +chr4_KI270925v1_alt 332320 333060 +chr4_KI270925v1_alt 333120 334140 +chr4_KI270925v1_alt 336860 337200 +chr4_KI270925v1_alt 337980 339180 +chr4_KI270925v1_alt 339420 342120 +chr4_KI270925v1_alt 342160 555799 +chr5_GL339449v2_alt 0 160800 +chr5_GL339449v2_alt 160900 517409 +chr5_GL339449v2_alt 517580 749525 +chr5_GL339449v2_alt 749700 1138692 +chr5_GL339449v2_alt 1238712 1612928 +chr5_GL383530v1_alt 0 40920 +chr5_GL383530v1_alt 56640 101241 +chr5_GL383531v1_alt 0 10898 +chr5_GL383531v1_alt 16240 173459 +chr5_GL383532v1_alt 0 58176 +chr5_GL383532v1_alt 78180 82728 +chr5_GL949742v1_alt 0 32972 +chr5_GL949742v1_alt 41780 226852 +chr5_KI270791v1_alt 0 96486 +chr5_KI270791v1_alt 99400 195710 +chr5_KI270792v1_alt 0 179043 +chr5_KI270793v1_alt 0 73633 +chr5_KI270793v1_alt 73660 75078 +chr5_KI270793v1_alt 75200 126136 +chr5_KI270794v1_alt 0 26504 +chr5_KI270794v1_alt 28400 164558 +chr5_KI270795v1_alt 0 47440 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3835534 3835894 +chr6_GL000254v2_alt 3836474 3836806 +chr6_GL000254v2_alt 3836834 3837534 +chr6_GL000254v2_alt 3843294 3843964 +chr6_GL000254v2_alt 3844374 3844715 +chr6_GL000254v2_alt 3845334 3846081 +chr6_GL000254v2_alt 3847094 3847439 +chr6_GL000254v2_alt 3848054 3848811 +chr6_GL000254v2_alt 3849634 3850174 +chr6_GL000254v2_alt 3850254 3850532 +chr6_GL000254v2_alt 3850794 3851260 +chr6_GL000254v2_alt 3851394 3851840 +chr6_GL000254v2_alt 3852234 3852841 +chr6_GL000254v2_alt 3853294 3853761 +chr6_GL000254v2_alt 3856794 3866943 +chr6_GL000254v2_alt 3867194 3881056 +chr6_GL000254v2_alt 3881534 3885870 +chr6_GL000254v2_alt 3887674 3888834 +chr6_GL000254v2_alt 3889354 3893354 +chr6_GL000254v2_alt 3924284 3925604 +chr6_GL000254v2_alt 3925804 3945804 +chr6_GL000254v2_alt 3945924 3946695 +chr6_GL000254v2_alt 3948485 3951881 +chr6_GL000254v2_alt 3952404 3952904 +chr6_GL000254v2_alt 3953064 3953364 +chr6_GL000254v2_alt 3953564 3954105 +chr6_GL000254v2_alt 3954364 3961052 +chr6_GL000254v2_alt 3961204 3967520 +chr6_GL000254v2_alt 3967704 3970264 +chr6_GL000254v2_alt 3970364 3979844 +chr6_GL000254v2_alt 3986844 3992984 +chr6_GL000254v2_alt 3993684 4018129 +chr6_GL000254v2_alt 4018304 4019847 +chr6_GL000254v2_alt 4020044 4278768 +chr6_GL000254v2_alt 4296701 4416587 +chr6_GL000254v2_alt 4588688 4827813 +chr6_GL000255v2_alt 0 516304 +chr6_GL000255v2_alt 675634 1234594 +chr6_GL000255v2_alt 1234934 2259134 +chr6_GL000255v2_alt 2259274 2297081 +chr6_GL000255v2_alt 2299134 2300141 +chr6_GL000255v2_alt 2300634 2537843 +chr6_GL000255v2_alt 2537974 2558654 +chr6_GL000255v2_alt 2558694 2675318 +chr6_GL000255v2_alt 2726488 3017580 +chr6_GL000255v2_alt 3044031 3110626 +chr6_GL000255v2_alt 3110731 3310650 +chr6_GL000255v2_alt 3363451 3711971 +chr6_GL000255v2_alt 3712291 3712731 +chr6_GL000255v2_alt 3712811 3713291 +chr6_GL000255v2_alt 3713951 3715974 +chr6_GL000255v2_alt 3716271 3723162 +chr6_GL000255v2_alt 3723291 3725571 +chr6_GL000255v2_alt 3726031 3729375 +chr6_GL000255v2_alt 3729571 3731015 +chr6_GL000255v2_alt 3731051 3734611 +chr6_GL000255v2_alt 3735531 3735971 +chr6_GL000255v2_alt 3736211 3736848 +chr6_GL000255v2_alt 3740851 3741151 +chr6_GL000255v2_alt 3741271 3741775 +chr6_GL000255v2_alt 3741951 3745491 +chr6_GL000255v2_alt 3745691 3755198 +chr6_GL000255v2_alt 3755231 3756607 +chr6_GL000255v2_alt 3756711 3761739 +chr6_GL000255v2_alt 3761771 3762131 +chr6_GL000255v2_alt 3762291 3763951 +chr6_GL000255v2_alt 3764191 3766246 +chr6_GL000255v2_alt 3767931 3768231 +chr6_GL000255v2_alt 3768631 3773011 +chr6_GL000255v2_alt 3773131 3777266 +chr6_GL000255v2_alt 3777391 3779791 +chr6_GL000255v2_alt 3779931 3786751 +chr6_GL000255v2_alt 3786791 3789231 +chr6_GL000255v2_alt 3789951 3793440 +chr6_GL000255v2_alt 3793651 3823931 +chr6_GL000255v2_alt 3824031 3824431 +chr6_GL000255v2_alt 3824471 3825624 +chr6_GL000255v2_alt 3825671 3837773 +chr6_GL000255v2_alt 3837931 3844756 +chr6_GL000255v2_alt 3845171 3848482 +chr6_GL000255v2_alt 3850011 3850362 +chr6_GL000255v2_alt 3851071 3851667 +chr6_GL000255v2_alt 3851911 3857371 +chr6_GL000255v2_alt 3857471 3857859 +chr6_GL000255v2_alt 3858171 3858871 +chr6_GL000255v2_alt 3859191 3987435 +chr6_GL000255v2_alt 4014410 4253770 +chr6_GL000255v2_alt 4254410 4606388 +chr6_GL000256v2_alt 0 21476 +chr6_GL000256v2_alt 22060 862502 +chr6_GL000256v2_alt 941944 1328544 +chr6_GL000256v2_alt 1328724 1548224 +chr6_GL000256v2_alt 1548264 1728419 +chr6_GL000256v2_alt 1745110 1769970 +chr6_GL000256v2_alt 1772270 1837334 +chr6_GL000256v2_alt 1839594 1984263 +chr6_GL000256v2_alt 1998546 2053437 +chr6_GL000256v2_alt 2088117 2102176 +chr6_GL000256v2_alt 2114597 2139193 +chr6_GL000256v2_alt 2303720 2342180 +chr6_GL000256v2_alt 2344220 2345240 +chr6_GL000256v2_alt 2345740 2411949 +chr6_GL000256v2_alt 2461895 2584369 +chr6_GL000256v2_alt 2584515 2605175 +chr6_GL000256v2_alt 2605215 2730095 +chr6_GL000256v2_alt 2730135 2731115 +chr6_GL000256v2_alt 2731175 3040886 +chr6_GL000256v2_alt 3055668 3094270 +chr6_GL000256v2_alt 3155408 3191898 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44960 45668 +chr6_KB021644v2_alt 45780 46200 +chr6_KB021644v2_alt 46780 47280 +chr6_KB021644v2_alt 48280 49060 +chr6_KB021644v2_alt 49400 49700 +chr6_KB021644v2_alt 49760 50920 +chr6_KB021644v2_alt 51200 51660 +chr6_KB021644v2_alt 52020 53080 +chr6_KB021644v2_alt 53680 58436 +chr6_KB021644v2_alt 58520 59340 +chr6_KB021644v2_alt 59980 60640 +chr6_KB021644v2_alt 61520 62511 +chr6_KB021644v2_alt 62840 65174 +chr6_KB021644v2_alt 66120 66856 +chr6_KB021644v2_alt 67980 68640 +chr6_KB021644v2_alt 68860 69532 +chr6_KB021644v2_alt 69780 73306 +chr6_KB021644v2_alt 73420 185823 +chr6_KI270758v1_alt 0 68829 +chr6_KI270797v1_alt 0 197536 +chr6_KI270798v1_alt 0 271782 +chr6_KI270799v1_alt 0 26120 +chr6_KI270799v1_alt 38220 152148 +chr6_KI270800v1_alt 0 76664 +chr6_KI270800v1_alt 83100 175808 +chr6_KI270801v1_alt 0 350903 +chr6_KI270801v1_alt 354900 870480 +chr6_KI270802v1_alt 0 64718 +chr6_KI270802v1_alt 65800 66404 +chr7_GL383534v2_alt 0 69934 +chr7_GL383534v2_alt 75780 119183 +chr7_KI270803v1_alt 0 314560 +chr7_KI270803v1_alt 314760 315780 +chr7_KI270803v1_alt 316880 317191 +chr7_KI270803v1_alt 320700 321705 +chr7_KI270803v1_alt 322040 325149 +chr7_KI270803v1_alt 329540 505789 +chr7_KI270803v1_alt 525928 662125 +chr7_KI270803v1_alt 662300 770218 +chr7_KI270803v1_alt 790597 1111570 +chr7_KI270804v1_alt 0 157952 +chr7_KI270805v1_alt 0 209988 +chr7_KI270806v1_alt 0 82317 +chr7_KI270806v1_alt 82580 83128 +chr7_KI270806v1_alt 83380 83605 +chr7_KI270806v1_alt 83740 84120 +chr7_KI270806v1_alt 84460 158166 +chr7_KI270807v1_alt 0 126434 +chr7_KI270808v1_alt 0 184707 +chr7_KI270808v1_alt 186720 271455 +chr7_KI270809v1_alt 0 14543 +chr7_KI270809v1_alt 17960 18540 +chr7_KI270809v1_alt 19720 20360 +chr7_KI270809v1_alt 20760 22456 +chr7_KI270809v1_alt 22700 23260 +chr7_KI270809v1_alt 23380 24260 +chr7_KI270809v1_alt 24540 24840 +chr7_KI270809v1_alt 24980 25560 +chr7_KI270809v1_alt 26780 27480 +chr7_KI270809v1_alt 27540 209586 +chr7_KI270899v1_alt 0 1920 +chr7_KI270899v1_alt 2080 5060 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125280 127100 +chr8_KI270813v1_alt 127140 134580 +chr8_KI270813v1_alt 134620 149600 +chr8_KI270813v1_alt 149720 153620 +chr8_KI270813v1_alt 153740 156900 +chr8_KI270813v1_alt 157280 157620 +chr8_KI270813v1_alt 158720 161000 +chr8_KI270813v1_alt 161200 163180 +chr8_KI270813v1_alt 163460 263940 +chr8_KI270813v1_alt 264080 300230 +chr8_KI270814v1_alt 0 141812 +chr8_KI270815v1_alt 0 40521 +chr8_KI270815v1_alt 41340 60523 +chr8_KI270815v1_alt 60620 68740 +chr8_KI270815v1_alt 69540 132244 +chr8_KI270816v1_alt 0 305841 +chr8_KI270817v1_alt 0 158983 +chr8_KI270818v1_alt 0 145606 +chr8_KI270819v1_alt 0 82300 +chr8_KI270819v1_alt 88020 133535 +chr8_KI270820v1_alt 0 12838 +chr8_KI270820v1_alt 15900 36640 +chr8_KI270821v1_alt 0 357294 +chr8_KI270821v1_alt 357420 427341 +chr8_KI270821v1_alt 427380 582880 +chr8_KI270821v1_alt 583120 642651 +chr8_KI270821v1_alt 642800 791063 +chr8_KI270821v1_alt 791300 985506 +chr8_KI270822v1_alt 0 624492 +chr8_KI270900v1_alt 0 73740 +chr8_KI270900v1_alt 74620 221220 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187171 +chr11_JH159136v1_alt 193920 200998 +chr11_JH159137v1_alt 0 10100 +chr11_JH159137v1_alt 10160 10887 +chr11_JH159137v1_alt 11540 12100 +chr11_JH159137v1_alt 12440 12878 +chr11_JH159137v1_alt 12980 13640 +chr11_JH159137v1_alt 16660 19420 +chr11_JH159137v1_alt 19600 20136 +chr11_JH159137v1_alt 20460 191409 +chr11_KI270826v1_alt 0 186169 +chr11_KI270827v1_alt 0 17775 +chr11_KI270827v1_alt 21000 67707 +chr11_KI270829v1_alt 0 65423 +chr11_KI270829v1_alt 75940 204059 +chr11_KI270830v1_alt 0 14393 +chr11_KI270830v1_alt 20160 177092 +chr11_KI270831v1_alt 0 296868 +chr11_KI270832v1_alt 0 172722 +chr11_KI270832v1_alt 174560 210133 +chr11_KI270902v1_alt 0 82398 +chr11_KI270902v1_alt 82540 83982 +chr11_KI270902v1_alt 84040 85192 +chr11_KI270902v1_alt 85380 85752 +chr11_KI270902v1_alt 85820 86260 +chr11_KI270902v1_alt 86300 87117 +chr11_KI270902v1_alt 87320 106711 +chr11_KI270903v1_alt 0 160600 +chr11_KI270903v1_alt 160680 214625 +chr11_KI270927v1_alt 0 88820 +chr11_KI270927v1_alt 88880 91320 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23000 23580 +chr12_GL877875v1_alt 24040 24780 +chr12_GL877875v1_alt 24860 26820 +chr12_GL877875v1_alt 26860 27520 +chr12_GL877875v1_alt 27620 38040 +chr12_GL877875v1_alt 38120 43186 +chr12_GL877875v1_alt 49580 54980 +chr12_GL877875v1_alt 56740 167313 +chr12_GL877876v1_alt 0 298397 +chr12_GL877876v1_alt 300760 303086 +chr12_GL877876v1_alt 303160 310000 +chr12_GL877876v1_alt 329108 408271 +chr12_KI270833v1_alt 0 76061 +chr12_KI270834v1_alt 0 85100 +chr12_KI270834v1_alt 85280 85565 +chr12_KI270834v1_alt 85740 119498 +chr12_KI270835v1_alt 0 9305 +chr12_KI270835v1_alt 9540 9934 +chr12_KI270835v1_alt 10180 238139 +chr12_KI270836v1_alt 0 49040 +chr12_KI270836v1_alt 49100 50760 +chr12_KI270836v1_alt 50860 51231 +chr12_KI270836v1_alt 51460 56134 +chr12_KI270837v1_alt 0 900 +chr12_KI270837v1_alt 20520 21080 +chr12_KI270837v1_alt 24080 40090 +chr12_KI270904v1_alt 0 225134 +chr12_KI270904v1_alt 225280 254071 +chr12_KI270904v1_alt 254420 254827 +chr12_KI270904v1_alt 255820 267463 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317260 +chr17_KI270909v1_alt 317400 319600 +chr17_KI270909v1_alt 319640 324740 +chr17_KI270909v1_alt 324920 325800 +chr17_KI270910v1_alt 0 157099 +chr18_GL383567v1_alt 0 52040 +chr18_GL383567v1_alt 52240 157739 +chr18_GL383567v1_alt 164180 289831 +chr18_GL383568v1_alt 0 52500 +chr18_GL383568v1_alt 57520 57920 +chr18_GL383568v1_alt 65180 66000 +chr18_GL383568v1_alt 67900 68220 +chr18_GL383568v1_alt 70100 70600 +chr18_GL383568v1_alt 70900 104552 +chr18_GL383569v1_alt 0 167950 +chr18_GL383570v1_alt 0 131795 +chr18_GL383570v1_alt 134320 134620 +chr18_GL383570v1_alt 137720 164789 +chr18_GL383571v1_alt 0 30251 +chr18_GL383571v1_alt 99565 198278 +chr18_GL383572v1_alt 0 159547 +chr18_KI270863v1_alt 0 167999 +chr18_KI270864v1_alt 0 38890 +chr18_KI270864v1_alt 38960 39820 +chr18_KI270864v1_alt 44660 111737 +chr18_KI270911v1_alt 0 157710 +chr18_KI270912v1_alt 0 174061 +chr19_GL000209v2_alt 0 48140 +chr19_GL000209v2_alt 48800 49407 +chr19_GL000209v2_alt 49720 50126 +chr19_GL000209v2_alt 50860 51200 +chr19_GL000209v2_alt 52020 54940 +chr19_GL000209v2_alt 55220 103237 +chr19_GL000209v2_alt 103460 104029 +chr19_GL000209v2_alt 104100 177381 +chr19_GL383573v1_alt 0 138496 +chr19_GL383573v1_alt 138640 160119 +chr19_GL383573v1_alt 160160 166380 +chr19_GL383573v1_alt 171360 171840 +chr19_GL383573v1_alt 172960 385657 +chr19_GL383574v1_alt 0 93922 +chr19_GL383574v1_alt 101103 155864 +chr19_GL383575v2_alt 0 10454 +chr19_GL383575v2_alt 19780 170222 +chr19_GL383576v1_alt 0 69090 +chr19_GL383576v1_alt 77180 188024 +chr19_GL949746v1_alt 0 108560 +chr19_GL949746v1_alt 108600 271742 +chr19_GL949746v1_alt 278505 309793 +chr19_GL949746v1_alt 314813 315563 +chr19_GL949746v1_alt 315653 487173 +chr19_GL949746v1_alt 487733 700652 +chr19_GL949746v1_alt 800672 987716 +chr19_GL949747v2_alt 0 108560 +chr19_GL949747v2_alt 108600 195632 +chr19_GL949747v2_alt 256652 271622 +chr19_GL949747v2_alt 278387 326368 +chr19_GL949747v2_alt 326752 394095 +chr19_GL949747v2_alt 399115 451955 +chr19_GL949747v2_alt 452095 452647 +chr19_GL949747v2_alt 452695 455183 +chr19_GL949747v2_alt 456035 456356 +chr19_GL949747v2_alt 457075 457483 +chr19_GL949747v2_alt 457835 458340 +chr19_GL949747v2_alt 458895 729520 +chr19_GL949748v2_alt 0 108560 +chr19_GL949748v2_alt 108600 195632 +chr19_GL949748v2_alt 720652 754362 +chr19_GL949748v2_alt 754432 754934 +chr19_GL949748v2_alt 755212 761614 +chr19_GL949748v2_alt 811614 845240 +chr19_GL949748v2_alt 877254 1064304 +chr19_GL949749v2_alt 0 108560 +chr19_GL949749v2_alt 108600 195632 +chr19_GL949749v2_alt 807652 860777 +chr19_GL949749v2_alt 904797 1091841 +chr19_GL949750v2_alt 0 108560 +chr19_GL949750v2_alt 108600 195632 +chr19_GL949750v2_alt 819640 855326 +chr19_GL949750v2_alt 879340 1066390 +chr19_GL949751v2_alt 0 108560 +chr19_GL949751v2_alt 108600 195632 +chr19_GL949751v2_alt 705652 789619 +chr19_GL949751v2_alt 815639 1002683 +chr19_GL949752v1_alt 0 108560 +chr19_GL949752v1_alt 108600 253362 +chr19_GL949752v1_alt 258382 300422 +chr19_GL949752v1_alt 300462 313674 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59100 61620 +chr19_KI270890v1_alt 61660 62220 +chr19_KI270890v1_alt 62300 110308 +chr19_KI270890v1_alt 110540 111100 +chr19_KI270890v1_alt 111160 160512 +chr19_KI270890v1_alt 160540 184499 +chr19_KI270891v1_alt 0 170680 +chr19_KI270914v1_alt 0 124180 +chr19_KI270914v1_alt 124860 125461 +chr19_KI270914v1_alt 125760 126180 +chr19_KI270914v1_alt 126940 127254 +chr19_KI270914v1_alt 128080 130995 +chr19_KI270914v1_alt 131280 131837 +chr19_KI270914v1_alt 131900 205194 +chr19_KI270915v1_alt 0 170665 +chr19_KI270916v1_alt 0 51320 +chr19_KI270916v1_alt 51400 55460 +chr19_KI270916v1_alt 55940 56552 +chr19_KI270916v1_alt 56860 57271 +chr19_KI270916v1_alt 58020 58340 +chr19_KI270916v1_alt 59160 62298 +chr19_KI270916v1_alt 62380 110381 +chr19_KI270916v1_alt 110620 111136 +chr19_KI270916v1_alt 111260 184516 +chr19_KI270917v1_alt 0 190932 +chr19_KI270918v1_alt 0 121011 +chr19_KI270918v1_alt 121320 123111 +chr19_KI270919v1_alt 0 170701 +chr19_KI270920v1_alt 0 198005 +chr19_KI270921v1_alt 0 70192 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266960 267978 +chr22_KI270879v1_alt 280620 281060 +chr22_KI270879v1_alt 281200 282013 +chr22_KI270879v1_alt 282300 283274 +chr22_KI270879v1_alt 284400 285574 +chr22_KI270879v1_alt 285600 286297 +chr22_KI270879v1_alt 287420 288220 +chr22_KI270879v1_alt 288460 290920 +chr22_KI270879v1_alt 291260 304135 +chr22_KI270928v1_alt 0 176103 +chrX_KI270880v1_alt 0 284869 +chrX_KI270881v1_alt 0 108080 +chrX_KI270881v1_alt 118440 119980 +chrX_KI270881v1_alt 120720 144206 +chrX_KI270913v1_alt 0 274009 +HLA-A*01:01:01:01 0 3503 +HLA-A*01:01:01:02N 0 3291 +HLA-A*01:01:38L 0 3374 +HLA-A*01:02 0 3374 +HLA-A*01:03 0 3503 +HLA-A*01:04N 0 3136 +HLA-A*01:09 0 3105 +HLA-A*01:11N 0 3374 +HLA-A*01:14 0 3095 +HLA-A*01:16N 0 2985 +HLA-A*01:20 0 3105 +HLA-A*02:01:01:01 0 3517 +HLA-A*02:01:01:02L 0 3287 +HLA-A*02:01:01:03 0 3023 +HLA-A*02:01:01:04 0 3516 +HLA-A*02:02:01 0 2917 +HLA-A*02:03:01 0 3517 +HLA-A*02:03:03 0 1457 +HLA-A*02:03:03 1480 3148 +HLA-A*02:05:01 0 3517 +HLA-A*02:06:01 0 3517 +HLA-A*02:07:01 0 3517 +HLA-A*02:10 0 3517 +HLA-A*02:251 0 3517 +HLA-A*02:259 0 1410 +HLA-A*02:259 1440 2978 +HLA-A*02:264 0 3002 +HLA-A*02:265 0 3148 +HLA-A*02:266 0 3084 +HLA-A*02:269 0 3101 +HLA-A*02:279 0 3103 +HLA-A*02:32N 0 3517 +HLA-A*02:376 0 3104 +HLA-A*02:43N 0 3218 +HLA-A*02:455 0 1438 +HLA-A*02:455 1460 3118 +HLA-A*02:48 0 3517 +HLA-A*02:51 0 3109 +HLA-A*02:533 0 3217 +HLA-A*02:53N 0 3305 +HLA-A*02:57 0 3054 +HLA-A*02:60:01 0 3112 +HLA-A*02:65 0 3387 +HLA-A*02:68 0 3109 +HLA-A*02:77 0 3371 +HLA-A*02:81 0 3309 +HLA-A*02:89 0 3371 +HLA-A*02:95 0 3388 +HLA-A*03:01:01:01 0 3502 +HLA-A*03:01:01:02N 0 3373 +HLA-A*03:01:01:03 0 3094 +HLA-A*03:02:01 0 3502 +HLA-A*03:11N 0 3404 +HLA-A*03:21N 0 3095 +HLA-A*03:36N 0 3142 +HLA-A*11:01:01 0 3503 +HLA-A*11:01:18 0 3503 +HLA-A*11:02:01 0 3503 +HLA-A*11:05 0 3373 +HLA-A*11:110 0 2903 +HLA-A*11:25 0 3073 +HLA-A*11:50Q 0 1225 +HLA-A*11:50Q 1340 3362 +HLA-A*11:60 0 3241 +HLA-A*11:69N 0 3500 +HLA-A*11:74 0 3227 +HLA-A*11:75 0 3184 +HLA-A*11:77 0 3233 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