dev-requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
#    pip-compile --extra=dev --output-file=dev-requirements.txt
#
anyio==4.3.0
    # via
    #   httpx
    #   jupyter-server
argon2-cffi==23.1.0
    # via jupyter-server
argon2-cffi-bindings==21.2.0
    # via argon2-cffi
arrow==1.3.0
    # via isoduration
asttokens==2.4.1
    # via stack-data
async-lru==2.0.4
    # via jupyterlab
attrs==23.2.0
    # via
    #   jsonschema
    #   pytest-mypy
    #   referencing
babel==2.14.0
    # via
    #   jupyterlab-server
    #   mkdocs-material
beautifulsoup4==4.12.3
    # via nbconvert
bleach==6.1.0
    # via nbconvert
build==1.0.3
    # via pip-tools
certifi==2024.2.2
    # via
    #   httpcore
    #   httpx
    #   requests
cffi==1.16.0
    # via argon2-cffi-bindings
cfgv==3.4.0
    # via pre-commit
charset-normalizer==3.3.2
    # via requests
click==8.1.7
    # via
    #   mkdocs
    #   pip-tools
colorama==0.4.6
    # via mkdocs-material
comm==0.2.1
    # via
    #   ipykernel
    #   ipywidgets
contourpy==1.2.0
    # via matplotlib
coverage[toml]==7.4.0
    # via
    #   coverage
    #   pytest-cov
cycler==0.12.1
    # via matplotlib
debugpy==1.8.1
    # via ipykernel
decorator==5.1.1
    # via ipython
defusedxml==0.7.1
    # via nbconvert
distlib==0.3.8
    # via virtualenv
executing==2.0.1
    # via stack-data
fastjsonschema==2.19.1
    # via nbformat
filelock==3.13.1
    # via
    #   pytest-mypy
    #   virtualenv
fonttools==4.49.0
    # via matplotlib
fqdn==1.5.1
    # via jsonschema
ghp-import==2.1.0
    # via mkdocs
h11==0.14.0
    # via httpcore
hmmlearn==0.3.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
httpcore==1.0.4
    # via httpx
httpx==0.27.0
    # via jupyterlab
identify==2.5.33
    # via pre-commit
idna==3.6
    # via
    #   anyio
    #   httpx
    #   jsonschema
    #   requests
iniconfig==2.0.0
    # via pytest
ipykernel==6.29.2
    # via
    #   jupyter
    #   jupyter-console
    #   jupyterlab
    #   mkdocs-jupyter
    #   qtconsole
ipython==8.22.0
    # via
    #   ipykernel
    #   ipywidgets
    #   jupyter-console
ipywidgets==8.1.2
    # via jupyter
isoduration==20.11.0
    # via jsonschema
jedi==0.19.1
    # via ipython
jinja2==3.1.3
    # via
    #   jupyter-server
    #   jupyterlab
    #   jupyterlab-server
    #   mkdocs
    #   mkdocs-material
    #   nbconvert
joblib==1.3.2
    # via scikit-learn
json5==0.9.17
    # via jupyterlab-server
jsonpointer==2.4
    # via jsonschema
jsonschema[format-nongpl]==4.21.1
    # via
    #   jupyter-events
    #   jupyterlab-server
    #   nbformat
jsonschema-specifications==2023.12.1
    # via jsonschema
jupyter==1.0.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
jupyter-client==8.6.0
    # via
    #   ipykernel
    #   jupyter-console
    #   jupyter-server
    #   nbclient
    #   qtconsole
jupyter-console==6.6.3
    # via jupyter
jupyter-core==5.7.1
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-console
    #   jupyter-server
    #   jupyterlab
    #   nbclient
    #   nbconvert
    #   nbformat
    #   qtconsole
jupyter-events==0.9.0
    # via jupyter-server
jupyter-lsp==2.2.2
    # via jupyterlab
jupyter-server==2.12.5
    # via
    #   jupyter-lsp
    #   jupyterlab
    #   jupyterlab-server
    #   notebook
    #   notebook-shim
jupyter-server-terminals==0.5.2
    # via jupyter-server
jupyterlab==4.1.2
    # via notebook
jupyterlab-pygments==0.3.0
    # via nbconvert
jupyterlab-server==2.25.3
    # via
    #   jupyterlab
    #   notebook
jupyterlab-widgets==3.0.10
    # via ipywidgets
jupytext==1.16.1
    # via mkdocs-jupyter
kiwisolver==1.4.5
    # via matplotlib
markdown==3.5.2
    # via
    #   mkdocs
    #   mkdocs-material
    #   pymdown-extensions
    #   python-markdown-math
markdown-it-py==3.0.0
    # via
    #   jupytext
    #   mdit-py-plugins
markupsafe==2.1.5
    # via
    #   jinja2
    #   mkdocs
    #   nbconvert
matplotlib==3.8.3
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   seaborn
matplotlib-inline==0.1.6
    # via
    #   ipykernel
    #   ipython
mdit-py-plugins==0.4.0
    # via jupytext
mdurl==0.1.2
    # via markdown-it-py
mergedeep==1.3.4
    # via mkdocs
mistune==3.0.2
    # via nbconvert
mkdocs==1.5.3
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   mkdocs-jupyter
    #   mkdocs-material
mkdocs-include-markdown-plugin==3.7.1
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
mkdocs-jupyter==0.24.5
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
mkdocs-material==9.4.6
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   mkdocs-jupyter
mkdocs-material-extensions==1.3.1
    # via mkdocs-material
mypy==1.8.0
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   pytest-mypy
mypy-extensions==1.0.0
    # via mypy
nbclient==0.9.0
    # via nbconvert
nbconvert==7.16.1
    # via
    #   jupyter
    #   jupyter-server
    #   mkdocs-jupyter
nbformat==5.9.2
    # via
    #   jupyter-server
    #   jupytext
    #   nbclient
    #   nbconvert
nest-asyncio==1.6.0
    # via ipykernel
nodeenv==1.8.0
    # via pre-commit
notebook==7.1.0
    # via jupyter
notebook-shim==0.2.4
    # via
    #   jupyterlab
    #   notebook
numpy==1.26.4
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   contourpy
    #   hmmlearn
    #   matplotlib
    #   pandas
    #   pandas-stubs
    #   scikit-learn
    #   scipy
    #   seaborn
overrides==7.7.0
    # via jupyter-server
packaging==23.2
    # via
    #   build
    #   ipykernel
    #   jupyter-server
    #   jupyterlab
    #   jupyterlab-server
    #   jupytext
    #   matplotlib
    #   mkdocs
    #   nbconvert
    #   pytest
    #   qtconsole
    #   qtpy
paginate==0.5.6
    # via mkdocs-material
pandas==2.2.0
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   seaborn
pandas-stubs==2.2.1.240316
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
pandocfilters==1.5.1
    # via nbconvert
parso==0.8.3
    # via jedi
pathspec==0.12.1
    # via mkdocs
pexpect==4.9.0
    # via ipython
pillow==10.2.0
    # via matplotlib
pip-tools==7.3.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
platformdirs==4.1.0
    # via
    #   jupyter-core
    #   mkdocs
    #   virtualenv
pluggy==1.3.0
    # via pytest
pre-commit==3.6.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
prometheus-client==0.20.0
    # via jupyter-server
prompt-toolkit==3.0.43
    # via
    #   ipython
    #   jupyter-console
psutil==5.9.8
    # via ipykernel
ptyprocess==0.7.0
    # via
    #   pexpect
    #   terminado
pure-eval==0.2.2
    # via stack-data
pycparser==2.21
    # via cffi
pygments==2.17.2
    # via
    #   ipython
    #   jupyter-console
    #   mkdocs-jupyter
    #   mkdocs-material
    #   nbconvert
    #   qtconsole
pymdown-extensions==10.7.1
    # via mkdocs-material
pyparsing==3.1.1
    # via matplotlib
pyproject-hooks==1.0.0
    # via build
pytest==7.4.4
    # via
    #   ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
    #   pytest-cov
    #   pytest-mock
    #   pytest-mypy
pytest-cov==4.1.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
pytest-mock==3.12.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
pytest-mypy==0.10.3
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
python-dateutil==2.8.2
    # via
    #   arrow
    #   ghp-import
    #   jupyter-client
    #   matplotlib
    #   pandas
python-json-logger==2.0.7
    # via jupyter-events
python-markdown-math==0.8
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
pytz==2024.1
    # via pandas
pyyaml==6.0.1
    # via
    #   jupyter-events
    #   jupytext
    #   mkdocs
    #   pre-commit
    #   pymdown-extensions
    #   pyyaml-env-tag
pyyaml-env-tag==0.1
    # via mkdocs
pyzmq==25.1.2
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-console
    #   jupyter-server
    #   qtconsole
qtconsole==5.5.1
    # via jupyter
qtpy==2.4.1
    # via qtconsole
referencing==0.33.0
    # via
    #   jsonschema
    #   jsonschema-specifications
    #   jupyter-events
regex==2023.12.25
    # via mkdocs-material
requests==2.31.0
    # via
    #   jupyterlab-server
    #   mkdocs-material
rfc3339-validator==0.1.4
    # via
    #   jsonschema
    #   jupyter-events
rfc3986-validator==0.1.1
    # via
    #   jsonschema
    #   jupyter-events
rpds-py==0.18.0
    # via
    #   jsonschema
    #   referencing
ruff==0.1.13
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
scikit-learn==1.4.1.post1
    # via hmmlearn
scipy==1.12.0
    # via
    #   hmmlearn
    #   scikit-learn
seaborn==0.13.2
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
send2trash==1.8.2
    # via jupyter-server
six==1.16.0
    # via
    #   asttokens
    #   bleach
    #   python-dateutil
    #   rfc3339-validator
sniffio==1.3.0
    # via
    #   anyio
    #   httpx
soupsieve==2.5
    # via beautifulsoup4
stack-data==0.6.3
    # via ipython
tabulate==0.9.0
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
terminado==0.18.0
    # via
    #   jupyter-server
    #   jupyter-server-terminals
threadpoolctl==3.3.0
    # via scikit-learn
tinycss2==1.2.1
    # via nbconvert
toml==0.10.2
    # via jupytext
tornado==6.4
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   jupyterlab
    #   notebook
    #   terminado
traitlets==5.14.1
    # via
    #   comm
    #   ipykernel
    #   ipython
    #   ipywidgets
    #   jupyter-client
    #   jupyter-console
    #   jupyter-core
    #   jupyter-events
    #   jupyter-server
    #   jupyterlab
    #   matplotlib-inline
    #   nbclient
    #   nbconvert
    #   nbformat
    #   qtconsole
types-python-dateutil==2.8.19.20240106
    # via arrow
types-pytz==2024.1.0.20240203
    # via pandas-stubs
types-tabulate==0.9.0.20240106
    # via ReCoDE-HMMs-for-the-discovery-of-behavioural-states (pyproject.toml)
typing-extensions==4.9.0
    # via mypy
tzdata==2024.1
    # via pandas
uri-template==1.3.0
    # via jsonschema
urllib3==2.2.1
    # via requests
virtualenv==20.25.0
    # via pre-commit
watchdog==4.0.0
    # via mkdocs
wcwidth==0.2.13
    # via prompt-toolkit
webcolors==1.13
    # via jsonschema
webencodings==0.5.1
    # via
    #   bleach
    #   tinycss2
websocket-client==1.7.0
    # via jupyter-server
wheel==0.42.0
    # via pip-tools
widgetsnbextension==4.0.10
    # via ipywidgets

# The following packages are considered to be unsafe in a requirements file:
# pip
# setuptools