diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 7177c12..9760244 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,34 +1,34 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.6.0
     hooks:
       - id: check-merge-conflict
       - id: debug-statements
       - id: end-of-file-fixer
       - id: trailing-whitespace
   - repo: https://github.com/PyCQA/isort
-    rev: "5.12.0"
+    rev: "5.13.2"
     hooks:
       - id: isort
   - repo: https://github.com/psf/black
-    rev: "23.9.1"
+    rev: "24.4.0"
     hooks:
       - id: black
   - repo: https://github.com/PyCQA/flake8
-    rev: 6.1.0
+    rev: 7.0.0
     hooks:
       - id: flake8
         additional_dependencies: [flake8-docstrings]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v1.5.1"
+    rev: "v1.9.0"
     hooks:
       - id: mypy
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.37.0
+    rev: v0.39.0
     hooks:
       - id: markdownlint
         args: ["--disable", "MD013", "--"]
   - repo: https://github.com/snakemake/snakefmt
-    rev: v0.8.4
+    rev: v0.10.1
     hooks:
       - id: snakefmt