setup.py

#!/usr/bin/env python
import os
import platform
import re
from pathlib import Path

from setuptools import Extension
from setuptools import find_packages
from setuptools import setup
from setuptools.dist import Distribution

# Enable code coverage for C code: we cannot use CFLAGS=-coverage in tox.ini, since that may mess with compiling
# dependencies (e.g. numpy). Therefore, we set SETUPPY_CFLAGS=-coverage in tox.ini and copy it to CFLAGS here (after
# deps have been safely installed).
if "TOX_ENV_NAME" in os.environ and os.environ.get("SETUPPY_EXT_COVERAGE") == "yes" and platform.system() == "Linux":
    CFLAGS = os.environ["CFLAGS"] = "-fprofile-arcs -ftest-coverage"
    LFLAGS = os.environ["LFLAGS"] = "-lgcov"
else:
    CFLAGS = ""
    LFLAGS = ""


class BinaryDistribution(Distribution):
    """
    Distribution which almost always forces a binary package with platform name
    """

    def has_ext_modules(self):
        return super().has_ext_modules() or not os.environ.get("SETUPPY_ALLOW_PURE")


def read(*names, **kwargs):
    with Path(__file__).parent.joinpath(*names).open(encoding=kwargs.get("encoding", "utf8")) as fh:
        return fh.read()


setup(
    name="laser-measles",
    version="0.0.1",
    license="MIT",
    description="Spatial models of measles implemented with the LASER toolkit.",
    long_description="{}\n{}".format(
        re.compile("^.. start-badges.*^.. end-badges", re.M | re.S).sub("", read("README.rst")),
        re.sub(":[a-z]+:`~?(.*?)`", r"``\1``", read("CHANGELOG.rst")),
    ),
    author="Christopher Lorton",
    author_email="christopher.lorton@gatesfoundation.org",
    url="https://github.com/InstituteforDiseaseModeling/laser-measles",
    packages=find_packages("src"),
    package_dir={"": "src"},
    py_modules=[path.stem for path in Path("src").glob("*.py")],
    include_package_data=True,
    zip_safe=False,
    classifiers=[
        # complete classifier list: http://pypi.python.org/pypi?%3Aaction=list_classifiers
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Developers",
        "License :: OSI Approved :: MIT License",
        "Operating System :: Unix",
        "Operating System :: POSIX",
        "Operating System :: Microsoft :: Windows",
        "Programming Language :: Python",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3 :: Only",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
        "Programming Language :: Python :: Implementation :: CPython",
        # uncomment if you test on these interpreters:
        # "Programming Language :: Python :: Implementation :: PyPy",
        # "Programming Language :: Python :: Implementation :: IronPython",
        # "Programming Language :: Python :: Implementation :: Jython",
        # "Programming Language :: Python :: Implementation :: Stackless",
        "Topic :: Utilities",
    ],
    project_urls={
        "Documentation": "https://laser-measles.readthedocs.io/en/latest/",
        "Changelog": "https://laser-measles.readthedocs.io/en/latest/changelog.html",
        "Issue Tracker": "https://github.com/InstituteforDiseaseModeling/laser-measles/issues",
    },
    keywords=[
        # eg: "keyword1", "keyword2", "keyword3",
    ],
    python_requires=">=3.8",
    install_requires=[
        "click",
        # eg: "aspectlib==1.1.1", "six>=1.7",
    ],
    extras_require={
        # eg:
        #   "rst": ["docutils>=0.11"],
        #   ":python_version=='3.8'": ["backports.zoneinfo"],
    },
    entry_points={
        "console_scripts": [
            "laser-measles = laser_measles.cli:run",
        ]
    },
    ext_modules=[
        Extension(
            str(path.relative_to("src").with_suffix("")).replace(os.sep, "."),
            sources=[str(path)],
            extra_compile_args=CFLAGS.split(),
            extra_link_args=LFLAGS.split(),
            include_dirs=[str(path.parent)],
        )
        for path in Path("src").glob("**/*.c")
    ],
    distclass=BinaryDistribution,
)