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2023-11-05 22:42:12.124 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp3l9cofpy
2023-11-05 22:42:12.145 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp15r2btgk
2023-11-05 22:42:12.166 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpb_pzicre
2023-11-05 22:42:12.172 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp4a549v0w
2023-11-05 22:42:12.194 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpyjsd9vkh
2023-11-05 22:42:12.195 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpuxpvi9wa
/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py:186: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
self.metrics = self.metrics.append(df_updated_metrics)
Traceback (most recent call last):
File "/workspace/dp_tools/multiQC_output_ASB/PE_datasets_w_raw_trim_align_multiQC/OSD-168/../../../extract_dataset.py", line 36, in
main()
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/workspace/dp_tools/multiQC_output_ASB/PE_datasets_w_raw_trim_align_multiQC/OSD-168/../../../extract_dataset.py", line 29, in main
metricsExtractor.extract_sections()
File "/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py", line 266, in extract_sections
_extract_section_from_json(
File "/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py", line 154, in _extract_section_from_json
df_plot_data.index = df_plot_data.index.set_names(
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/util/_decorators.py", line 311, in wrapper
return func(*args, **kwargs)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 1848, in set_names
idx._set_names(names, level=level)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 1731, in _set_names
raise ValueError(f"Length of new names must be 1, got {len(values)}")
ValueError: Length of new names must be 1, got 2
The text was updated successfully, but these errors were encountered:
START OSD-168
pull metrics
2023-11-05 22:42:12.124 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp3l9cofpy
2023-11-05 22:42:12.145 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp15r2btgk
2023-11-05 22:42:12.166 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpb_pzicre
2023-11-05 22:42:12.172 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmp4a549v0w
2023-11-05 22:42:12.194 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpyjsd9vkh
2023-11-05 22:42:12.195 | DEBUG | dp_tools.core.files.isa_archive:fetch_isa_files:29 - Extracting ISA Archive to temp directory: /tmp/tmpuxpvi9wa
/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py:186: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
self.metrics = self.metrics.append(df_updated_metrics)
Traceback (most recent call last):
File "/workspace/dp_tools/multiQC_output_ASB/PE_datasets_w_raw_trim_align_multiQC/OSD-168/../../../extract_dataset.py", line 36, in
main()
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/workspace/dp_tools/multiQC_output_ASB/PE_datasets_w_raw_trim_align_multiQC/OSD-168/../../../extract_dataset.py", line 29, in main
metricsExtractor.extract_sections()
File "/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py", line 266, in extract_sections
_extract_section_from_json(
File "/workspace/dp_tools/dp_tools/core/utilites/metrics_extractor.py", line 154, in _extract_section_from_json
df_plot_data.index = df_plot_data.index.set_names(
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/util/_decorators.py", line 311, in wrapper
return func(*args, **kwargs)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 1848, in set_names
idx._set_names(names, level=level)
File "/home/gitpod/miniconda3/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 1731, in _set_names
raise ValueError(f"Length of new names must be 1, got {len(values)}")
ValueError: Length of new names must be 1, got 2
The text was updated successfully, but these errors were encountered: