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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.janelia.colormipsearch</groupId>
<artifactId>colormipsearch</artifactId>
<version>3.1.0</version>
<packaging>pom</packaging>
<properties>
<!-- build properties -->
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<jaxrs.jersey.version>2.37</jaxrs.jersey.version>
<scopes.provided>provided</scopes.provided>
<spark.version>3.4.0</spark.version>
<spark.core>spark-core_2.13</spark.core>
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
<jackson.version>2.14.1</jackson.version>
<slf4j.version>1.7.36</slf4j.version>
</properties>
<profiles>
<profile>
<id>intellij</id>
<properties>
<scopes.provided>compile</scopes.provided>
</properties>
</profile>
<profile>
<id>jdk21</id>
<properties>
<maven.compiler.source>21</maven.compiler.source>
<maven.compiler.target>21</maven.compiler.target>
</properties>
</profile>
<profile>
<id>itest</id>
<build>
<defaultGoal>integration-test</defaultGoal>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.3.1</version>
<executions>
<execution>
<id>add-integration-test-resources</id>
<phase>process-test-resources</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>${project.build.testOutputDirectory}</outputDirectory>
<resources>
<resource>
<directory>src/itest/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>3.4.0</version>
<executions>
<execution>
<id>add-integration-test-source</id>
<phase>generate-test-sources</phase>
<goals>
<goal>add-test-source</goal>
</goals>
<configuration>
<sources>
<source>src/itest/java</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.2.5</version>
<configuration>
<!-- skip all unit tests so that tests are actually not executed twice -->
<skipTests>true</skipTests>
</configuration>
<executions>
<execution>
<id>unit-test</id>
<phase>test</phase>
<goals>
<goal>test</goal>
</goals>
<configuration>
<skipTests>false</skipTests>
<includes>
<include>**/*Test</include>
</includes>
<excludes>
<exclude>**/*ITest</exclude>
</excludes>
</configuration>
</execution>
<execution>
<id>integration-tests</id>
<phase>integration-test</phase>
<goals>
<goal>test</goal>
</goals>
<configuration>
<skipTests>false</skipTests>
<includes>
<include>**/*ITest</include>
</includes>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<repositories>
<!-- for BioFormats -->
<repository>
<id>imagej-repository</id>
<url>https://maven.scijava.org/content/repositories/ome-releases/</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
</repositories>
<dependencyManagement>
<dependencies>
<!-- Logging -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>2.17.1</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>2.17.1</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-joda</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.jaxrs</groupId>
<artifactId>jackson-jaxrs-json-provider</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.github.victools</groupId>
<artifactId>jsonschema-generator</artifactId>
<version>4.23.0</version>
</dependency>
<dependency>
<groupId>com.github.victools</groupId>
<artifactId>jsonschema-module-jackson</artifactId>
<version>4.21.0</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-client</artifactId>
<version>${jaxrs.jersey.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-json-jackson</artifactId>
<version>${jaxrs.jersey.version}</version>
<exclusions>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</exclusion>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.inject</groupId>
<artifactId>jersey-hk2</artifactId>
<version>${jaxrs.jersey.version}</version>
</dependency>
<!-- Utilities -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>32.0.0-jre</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.9</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
<artifactId>jsr305</artifactId>
<version>3.0.2</version>
</dependency>
<dependency>
<groupId>net.jodah</groupId>
<artifactId>failsafe</artifactId>
<version>2.3.3</version>
</dependency>
<dependency>
<groupId>com.beust</groupId>
<artifactId>jcommander</artifactId>
<version>1.78</version>
</dependency>
<!-- Validation -->
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>2.0.1.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate.validator</groupId>
<artifactId>hibernate-validator</artifactId>
<version>6.2.5.Final</version>
</dependency>
<dependency>
<groupId>org.glassfish</groupId>
<artifactId>jakarta.el</artifactId>
<version>3.0.4</version>
</dependency>
<!-- Spark -->
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>${spark.core}</artifactId>
<version>${spark.version}</version>
<scope>${scopes.provided}</scope>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j-impl</artifactId>
</exclusion>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
<exclusion>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- Image Processing -->
<dependency>
<groupId>net.imagej</groupId>
<artifactId>ij</artifactId>
<version>1.53v</version>
</dependency>
<!-- Database -->
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongodb-driver-sync</artifactId>
<version>5.1.2</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>bson</artifactId>
<version>5.1.2</version>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.1</version>
<scope>test</scope>
</dependency>
</dependencies>
</dependencyManagement>
<distributionManagement>
<repository>
<id>janelia-releases</id>
<name>Janelia Nexus Repository</name>
<url>https://nexus.janelia.org/repository/maven-releases</url>
</repository>
</distributionManagement>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.13.0</version>
<configuration>
<source>${maven.compiler.source}</source>
<target>${maven.compiler.target}</target>
<compilerArgs>
<arg>-Xlint:unchecked</arg>
</compilerArgs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.2.5</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>3.0.1</version>
<configuration>
<useReleaseProfile>false</useReleaseProfile>
<goals>deploy</goals>
<autoVersionSubmodules>true</autoVersionSubmodules>
</configuration>
</plugin>
</plugins>
</build>
<modules>
<module>colormipsearch-api</module>
<module>colormipsearch-persist</module>
<module>colormipsearch-tools</module>
<module>colormipsearch-dist</module>
</modules>
</project>