Dockerfile-jupyter

FROM julia:1.6.1 as builder

ENV USER jovyan
ENV USER_HOME_DIR /home/${USER}
ENV JULIA_DEPOT_PATH ${USER_HOME_DIR}/.julia
ENV NOTEBOOK_DIR ${USER_HOME_DIR}/notebooks
ENV JULIA_NUM_THREADS 100

RUN useradd -m -d ${USER_HOME_DIR} ${USER} && \
    mkdir -p ${NOTEBOOK_DIR}

RUN apt-get update -y &&\ 
    apt-get upgrade -y &&\
    curl -fsSL https://deb.nodesource.com/setup_14.x | bash - &&\
    apt-get install -y --no-install-recommends git build-essential &&\
    apt-get clean -y &&\
    apt-get autoclean -y

USER ${USER}

COPY --chown=${USER}:${USER} . ${USER_HOME_DIR}/
WORKDIR ${USER_HOME_DIR}

RUN mkdir -p ${USER_HOME_DIR}/.julia/environments/v1.6/ &&\
    cp *.toml ${USER_HOME_DIR}/.julia/environments/v1.6/ &&\
    julia -e "import Pkg; Pkg.activate(); Pkg.instantiate(); Pkg.precompile();"

USER root
RUN julia create_sysimage.jl


FROM jupyter/base-notebook:hub-1.4.1

USER root
RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.6/julia-1.6.1-linux-x86_64.tar.gz && \
    tar -xvzf julia-1.6.1-linux-x86_64.tar.gz && \
    mv julia-1.6.1 /opt/ && \
    ln -s /opt/julia-1.6.1/bin/julia /usr/local/bin/julia && \
    rm julia-1.6.1-linux-x86_64.tar.gz

COPY --from=builder /usr/local/julia/lib/julia/sys.so /opt/julia-1.6.1/lib/julia/sys.so
COPY --chown=${NB_USER}:users --from=builder /home/jovyan/.julia /home/${NB_USER}/.julia
RUN apt-get update && apt-get install --no-install-recommends -y git && apt-get clean -y && apt-get autoclean -y

USER ${NB_USER}

COPY --chown=${NB_USER}:users ./runpluto.sh ./runpluto.sh

COPY --chown=${NB_USER}:users ./Project.toml ./Project.toml
COPY --chown=${NB_USER}:users ./Manifest.toml ./Manifest.toml

ENV USER_HOME_DIR /home/${NB_USER}
ENV JULIA_PROJECT ${USER_HOME_DIR}
ENV JULIA_DEPOT_PATH ${USER_HOME_DIR}/.julia
WORKDIR ${USER_HOME_DIR}

RUN jupyter labextension install @jupyterlab/server-proxy && \
    jupyter lab build && \
    jupyter lab clean && \
    pip install git+https://github.com/pankgeorg/pluto-on-jupyterlab.git --no-cache-dir && \
    rm -rf ~/.cache