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8-bit hdf5 images are converted wrongly on writing for elastix #13

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K-Meech opened this issue Dec 13, 2021 · 0 comments
Open

8-bit hdf5 images are converted wrongly on writing for elastix #13

K-Meech opened this issue Dec 13, 2021 · 0 comments

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@K-Meech
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K-Meech commented Dec 13, 2021

At the moment, hdf5 images are read with 16-bit imageloaders in bigdataviewer - see: bigdataviewer/bigdataviewer-core#128

This gives weird results, as I then try and convert from 16-bit to 8-bit to write for elastix and end up writing images to a strange range. Would be easiest to fix upstream.
Use n5 for now.
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@K-Meech