Scaden process issue

[ThomasThaewel]

Dear Kevin,
I used scaden simulate with an h5ad object to generate my training data. Then I created the text file for the bulk data with the example in mind(rows_index=Genes/columns=samples). However when I try to run scaden process I get this error:

scaden process data.h5ad scaden_bulk.text

Traceback (most recent call last):
File "/Users/ty176/opt/miniconda3/envs/scaden/bin/scaden", line 8, in
sys.exit(main())
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/scaden/main.py", line 48, in main
cli()
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/click/core.py", line 1137, in call
return self.main(*args, **kwargs)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/click/core.py", line 1062, in main
rv = self.invoke(ctx)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/click/core.py", line 1668, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/click/core.py", line 763, in invoke
return __callback(*args, **kwargs)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/scaden/main.py", line 155, in process
processing(
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/scaden/process.py", line 35, in processing
preprocess_h5ad_data(raw_input_path=training_data,
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/scaden/model/functions.py", line 67, in preprocess_h5ad_data
raw_input.X = sample_scaling(raw_input.X, scaling_option)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/anndata/_core/anndata.py", line 618, in X
_subset(self._adata_ref.X, (self._oidx, self._vidx)),
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/functools.py", line 877, in wrapper
return dispatch(args[0].class)(*args, **kw)
File "/Users/ty176/opt/miniconda3/envs/scaden/lib/python3.9/site-packages/anndata/_core/index.py", line 127, in _subset
return a[subset_idx]
IndexError: arrays used as indices must be of integer (or boolean) type

I am not sure what I did wrong in terms of the input files, do you maybe have an Idea what to change here?
Thanks a lot

[ZhiyunGong]

Having the same issue...