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Automatic cell type labeling for easier data preparation #69

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KevinMenden opened this issue Jan 21, 2021 · 0 comments
Open

Automatic cell type labeling for easier data preparation #69

KevinMenden opened this issue Jan 21, 2021 · 0 comments
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enhancement New feature or request

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@KevinMenden
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Currently the biggest hurdle for using Scaden is to prepare the training data.

This could be substantially eased by developing a semi-automatic pipeline (or maybe fully automatic), which converts raw scRNA-seq datasets into training data.

The most important part for this is a automatic cell type identification tool, because that's the most important manual step at the moment.

@KevinMenden KevinMenden added the enhancement New feature or request label Jan 25, 2021
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