From f3ea80396d7f885b6dc4ff818669934fe828a6a0 Mon Sep 17 00:00:00 2001 From: Wendell Pereira Date: Tue, 8 Feb 2022 11:34:35 -0500 Subject: [PATCH] Create packages_version.rst --- docs/packages_version.rst | 112 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 112 insertions(+) create mode 100644 docs/packages_version.rst diff --git a/docs/packages_version.rst b/docs/packages_version.rst new file mode 100644 index 0000000..667cb29 --- /dev/null +++ b/docs/packages_version.rst @@ -0,0 +1,112 @@ +.. _packages_version: + +******************* +Session information +******************* + +Session information of the Asc-Seurat's environment (Docker image v2.2) +======================================================================= + +sessionInfo() + + R version 4.0.1 (2020-06-06) + Platform: x86_64-pc-linux-gnu (64-bit) + Running under: Debian GNU/Linux bookworm/Matrix products: default + + BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 + LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0 + +locale: + [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C + [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 + [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 + [7] LC_PAPER=en_US.UTF-8 LC_NAME=C + [9] LC_ADDRESS=C LC_TELEPHONE=C + [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C + +attached base packages: + [1] parallel stats4 grid stats graphics grDevices utils + [8] datasets methods base + +other attached packages: + [1] glmGamPoi_1.2.0 dynfeature_1.0.0 + [3] dynwrap_1.2.2 dynplot_1.1.2 + [5] topGO_2.42.0 SparseM_1.81 + [7] GO.db_3.12.1 AnnotationDbi_1.52.0 + [9] graph_1.68.0 biomaRt_2.46.3 + [11] multtest_2.46.0 slingshot_1.8.0 + [13] princurve_2.1.6 SingleCellExperiment_1.12.0 + [15] SummarizedExperiment_1.20.0 Biobase_2.50.0 + [17] GenomicRanges_1.42.0 GenomeInfoDb_1.26.7 + [19] IRanges_2.24.1 S4Vectors_0.28.1 + [21] BiocGenerics_0.36.1 MatrixGenerics_1.2.1 + [23] matrixStats_0.61.0 ComplexHeatmap_2.6.2 + [25] vroom_1.5.7 scales_1.1.1 + [27] hdf5r_1.3.5 DT_0.20 + [29] shinycssloaders_1.0.0 ggthemes_4.2.4 + [31] future_1.23.0 rclipboard_0.1.5 + [33] shinyFeedback_0.4.0 shinyWidgets_0.6.4 + [35] shiny_1.7.1 sctransform_0.3.3 + [37] reactable_0.2.3 circlize_0.4.13 + [39] patchwork_1.1.1 SeuratObject_4.0.4 + [41] Seurat_4.1.0 forcats_0.5.1 + [43] stringr_1.4.0 dplyr_1.0.7 + [45] purrr_0.3.4 readr_2.1.2 + [47] tidyr_1.2.0 tibble_3.1.6 + [49] ggplot2_3.3.5 tidyverse_1.3.1 + +loaded via a namespace (and not attached): + [1] rappdirs_0.3.3 scattermore_0.7 GA_3.2.2 + [4] bit64_4.0.5 irlba_2.3.5 DelayedArray_0.16.3 + [7] data.table_1.14.2 rpart_4.1-15 RCurl_1.98-1.5 + [10] generics_0.1.2 cowplot_1.1.1 RSQLite_2.2.9 + [13] RANN_2.6.1 carrier_0.1.0 bit_4.0.4 + [16] tzdb_0.2.0 spatstat.data_2.1-2 xml2_1.3.3 + [19] lubridate_1.8.0 httpuv_1.6.5 assertthat_0.2.1 + [22] viridis_0.6.2 fontawesome_0.2.2 hms_1.1.1 + [25] jquerylib_0.1.4 promises_1.2.0.1 fansi_1.0.2 + [28] progress_1.2.2 dbplyr_2.1.1 readxl_1.3.1 + [31] igraph_1.2.11 DBI_1.1.2 htmlwidgets_1.5.4 + [34] spatstat.geom_2.3-1 dyndimred_1.0.4 ellipsis_0.3.2 + [37] backports_1.4.1 RcppParallel_5.1.5 deldir_1.0-6 + [40] vctrs_0.3.8 remotes_2.4.2 Cairo_1.5-14 + [43] ROCR_1.0-11 abind_1.4-5 cachem_1.0.6 + [46] withr_2.4.3 ggforce_0.3.3 prettyunits_1.1.1 + [49] goftest_1.2-3 cluster_2.1.0 ape_5.6-1 + [52] lazyeval_0.2.2 crayon_1.4.2 babelwhale_1.0.3 + [55] pkgconfig_2.0.3 tweenr_1.0.2 nlme_3.1-148 + [58] rlang_1.0.0 globals_0.14.0 lifecycle_1.0.1 + [61] miniUI_0.1.1.1 BiocFileCache_1.14.0 modelr_0.1.8 + [64] cellranger_1.1.0 rprojroot_2.0.2 polyclip_1.10-0 + [67] lmtest_0.9-39 Matrix_1.4-0 zoo_1.8-9 + [70] reprex_2.0.1 ggridges_0.5.3 GlobalOptions_0.1.2 + [73] processx_3.5.2 png_0.1-7 viridisLite_0.4.0 + [76] rjson_0.2.21 bitops_1.0-7 KernSmooth_2.23-17 + [79] blob_1.2.2 shape_1.4.6 parallelly_1.30.0 + [82] memoise_2.0.1 magrittr_2.0.2 plyr_1.8.6 + [85] ica_1.0-2 zlibbioc_1.36.0 compiler_4.0.1 + [88] RColorBrewer_1.1-2 clue_0.3-60 fitdistrplus_1.1-6 + [91] cli_3.1.1 XVector_0.30.0 listenv_0.8.0 + [94] pbapply_1.5-0 ps_1.6.0 MASS_7.3-51.6 + [97] mgcv_1.8-31 tidyselect_1.1.1 stringi_1.7.6 + [100] yaml_2.2.2 askpass_1.1 ggrepel_0.9.1 + [103] sass_0.4.0 tools_4.0.1 future.apply_1.8.1 + [106] rstudioapi_0.13 foreach_1.5.1 gridExtra_2.3 + [109] farver_2.1.0 Rtsne_0.15 ggraph_2.0.5 + [112] proxyC_0.2.4 digest_0.6.29 dynparam_1.0.2 + [115] Rcpp_1.0.8 broom_0.7.12 later_1.3.0 + [118] RcppAnnoy_0.0.19 httr_1.4.2 colorspace_2.0-2 + [121] ranger_0.13.1 rvest_1.0.2 XML_3.99-0.8 + [124] fs_1.5.2 tensor_1.5 reticulate_1.24 + [127] splines_4.0.1 uwot_0.1.11 lmds_0.1.0 + [130] spatstat.utils_2.3-0 graphlayouts_0.8.0 plotly_4.10.0 + [133] xtable_1.8-4 jsonlite_1.7.3 tidygraph_1.2.0 + [136] R6_2.5.1 pillar_1.7.0 htmltools_0.5.2 + [139] mime_0.12 glue_1.6.1 fastmap_1.1.0 + [142] codetools_0.2-16 utf8_1.2.2 lattice_0.20-41 + [145] bslib_0.3.1 spatstat.sparse_2.1-0 curl_4.3.2 + [148] leiden_0.3.9 openssl_1.4.6 survival_3.1-12 + [151] desc_1.4.0 dynutils_1.0.6 munsell_0.5.0 + [154] GetoptLong_1.0.5 GenomeInfoDbData_1.2.4 iterators_1.0.13 + [157] haven_2.4.3 reshape2_1.4.4 gtable_0.3.0 + [160] spatstat.core_2.3-2 \ No newline at end of file