README.md

Network Community Toolbox in Python

Network Connectivity Toolbox in Python. This repository is still developing. Help us develop by putting on issues or pull-request!

You can find the original Matlab code snippets are available here. The former Python version for Network Connectivity Toolbox is available here.

Installation

Using pip to install directly from the repository

$ pip install git+git://github.com/KordingLab/nctpy.git

Or install by cloning from the repository

$ git clone https://github.com/KordingLab/nctpy
$ cd nctpy
$ python setup.py install

Usage

Basically, we have functions equivalent to Network Community Toolbox.

import nct
comm_ave_pairwise_spatial_dist = nct.comm_ave_pairwise_spatial_dist(partitions, locations)

Requirements

• numpy
• scikit-learn
• networkx

Acknowledgement

This repository is developed during BE 566 (Network Neuroscience) class at the University of Pennsylvania taught by Prof. Danille Bassett. The repository is developed at Konrad Kording lab.