diff --git a/integration-tests/gradle/projects/it-multiplatform-0/gradle.properties b/integration-tests/gradle/projects/it-multiplatform-0/gradle.properties
index 4d8f284781..1e2686effb 100644
--- a/integration-tests/gradle/projects/it-multiplatform-0/gradle.properties
+++ b/integration-tests/gradle/projects/it-multiplatform-0/gradle.properties
@@ -3,7 +3,3 @@
 #
 
 dokka_it_kotlin_version=1.9.10
-#these flags are enabled by default since 1.6.20.
-#remove when this test is executed with Kotlin >= 1.6.20
-kotlin.mpp.enableGranularSourceSetsMetadata=true
-kotlin.native.enableDependencyPropagation=false
diff --git a/integration-tests/gradle/src/integrationTest/kotlin/org/jetbrains/dokka/it/gradle/Multiplatform0GradleIntegrationTest.kt b/integration-tests/gradle/src/integrationTest/kotlin/org/jetbrains/dokka/it/gradle/Multiplatform0GradleIntegrationTest.kt
index e43bc05985..d8f5cee254 100644
--- a/integration-tests/gradle/src/integrationTest/kotlin/org/jetbrains/dokka/it/gradle/Multiplatform0GradleIntegrationTest.kt
+++ b/integration-tests/gradle/src/integrationTest/kotlin/org/jetbrains/dokka/it/gradle/Multiplatform0GradleIntegrationTest.kt
@@ -27,7 +27,19 @@ class Multiplatform0GradleIntegrationTest : AbstractGradleIntegrationTest() {
     @ParameterizedTest(name = "{0}")
     @ArgumentsSource(AllSupportedTestedVersionsArgumentsProvider::class)
     fun execute(buildVersions: BuildVersions) {
-        val result = createGradleRunner(buildVersions, "dokkaHtml", "-i", "-s").buildRelaxed()
+        // `enableGranularSourceSetsMetadata` and  `enableDependencyPropagation` flags are enabled by default since 1.6.20.
+        // remove when this test is executed with Kotlin >= 1.6.20
+        val result = if (buildVersions.kotlinVersion < "1.6.20")
+            createGradleRunner(
+                buildVersions,
+                "dokkaHtml",
+                "-i",
+                "-s",
+                "-Pkotlin.mpp.enableGranularSourceSetsMetadata=true",
+                "-Pkotlin.native.enableDependencyPropagation=false"
+            ).buildRelaxed()
+        else
+            createGradleRunner(buildVersions, "dokkaHtml", "-i", "-s").buildRelaxed()
 
         assertEquals(TaskOutcome.SUCCESS, assertNotNull(result.task(":dokkaHtml")).outcome)