multi_channel_support.md

Multi-channel visualisation

Multi-channel image data is supported although increased memory consumption may be observed. In general, all operations available in CLIJx-Assistant also process multi-channel data. However, for typical image segmentation workflows, it is recommended to extract a single channel, eg. before segmenting the image.

It is recommended to utilize modern GDDR6-based GPU hardware for 3D visualisation.

How to visualize multi-channel 3D data

Open your data set. Start the CLIJx-Assistant, ensure that pixel/voxel size is correctly configured and follow such a workflows:

• Your dataset
  • CLIJx-Assistant Starting point
    • Make isotropic
      • Rigid Transform
        • Maximum Z Projection

<iframe src="images/incbator_multichannel.mp4" width="450" height="275"></iframe> [Download video](images/incbator_multichannel.mp4) [Image data source: Johannes Girstmair, Tomancak lab, MPI CBG]

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