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setup.cfg
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setup.cfg
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[metadata]
name = bioimageloader
author = Seongbin Lim
author_email = [email protected]
description = load bioimages for machine learning
long_description = file: README.md
long_description_content_type = text/markdown
url = https://github.com/LaboratoryOpticsBiosciences/bioimageloader
version = 0.0.9
license = BSD-3-Clause
classifiers =
Development Status :: 3 - Alpha
License :: OSI Approved :: BSD License
Intended Audience :: Education
Intended Audience :: Science/Research
Programming Language :: Python :: 3
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Topic :: Scientific/Engineering
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Image Processing
Topic :: Scientific/Engineering :: Artificial Intelligence
[options]
python_requires = >= 3.8
packages = find:
zip_safe = False
install_requires =
numpy
scipy
Pillow
opencv-python-headless
tifffile
imagecodecs
albumentations # scikit-image, opencv-python-headless, scipy
scikit-image
PyYAML
pycocotools #to parse COCO annotations
gimpformats # MurphyLab to handle .xcf
[options.extras_require]
all =
%(dev)s
%(torch)s
dev =
pre-commit
mypy
isort
flake8
Sphinx==4.5.0
numpydoc==1.2.1
furo==2022.4.7
nbsphinx==0.8.8
sphinx-copybutton==0.5.0
plotly # for plot
scikit-learn
gimpformats # too tight dependency requirements
torch =
torch
torchvision
tensorflow =
tensorflow