The aim of this project is to compare the results from three different Illumina sequence denoising pipelines.
The three pipelines are:
None of the raw sequencing data is contained within this repository.
Contains all scripts used to modify any of the Database files All Databases were generated using blast tools
Cotains all the configuration files to run the different pipelines
Contains all scripts that were used strictly for the analysis of the resulting amplicon sequence variants from the pipelines
Contains the scripts that were used to run the three different pipelines
Contains all the Rscripts that were used to generate plots as well as assign taxonomy.