We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Unable to install cob via pip on Mac OS X.
Error output:
ERROR: Failed building wheel for bcolz Running setup.py clean for bcolz Building wheel for blaze (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/ee/d1/16/1011f12ce541cb352c69c6edbb81ef18020ecbcc4324d52113 Building wheel for python-Levenshtein (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/de/c2/93/660fd5f7559049268ad2dc6d81c4e39e9e36518766eaf7e342 Building wheel for mpmath (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/63/9d/8e/37c3f6506ed3f152733a699e92d8e0c9f5e5f01dea262f80ad Building wheel for odo (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/69/70/59/7963b5d20822afab8bd57898162a92d88f73ac5d5a21268db6 Building wheel for psutil (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/90/7e/74/bb640d77775e6b6a78bcc3120f9fea4d2a28b2706de1cff37d Building wheel for sqlalchemy (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/74/97/23789e1e541fb3d64dc9a921a676539695b3d184cf77f5b009 Building wheel for toolz (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/0c/f6/ce6b2d1aa459ee97cc3c0f82236302bd62d89c86c700219463 Building wheel for backcall (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/98/b0/dd/29e28ff615af3dda4c67cab719dd51357597eabff926976b45 Building wheel for datashape (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/8d/06/05/c1cba3d57bdcfd3960e3f60a9fdc97e4baef2ef09af0ad1ef8 Building wheel for googleapis-common-protos (setup.py) ... done Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/9e/3d/a2/1bec8bb7db80ab3216dbc33092bb7ccd0debfb8ba42b5668d5 Successfully built camoco minus80 pyyaml termcolor powerlaw blaze python-Levenshtein mpmath odo psutil sqlalchemy toolz backcall datashape googleapis-common-protos Failed to build bcolz Installing collected packages: click, itsdangerous, Werkzeug, MarkupSafe, Jinja2, flask, gunicorn, google-cloud, six, google-resumable-media, urllib3, idna, chardet, requests, protobuf, googleapis-common-protos, pyasn1, rsa, cachetools, pyasn1-modules, google-auth, pytz, google-api-core, google-cloud-core, google-cloud-storage, python-dateutil, pandas, bcolz, flask-cors, multipledispatch, datashape, toolz, decorator, networkx, odo, psutil, sqlalchemy, blaze, termcolor, pyyaml, asn1crypto, pycparser, cffi, cryptography, asyncssh, docutils, jmespath, botocore, s3transfer, boto3, fuzzywuzzy, python-Levenshtein, tqdm, backoff, minus80, cython, ipython-genutils, traitlets, backcall, appnope, pickleshare, ptyprocess, pexpect, parso, jedi, wcwidth, prompt-toolkit, pygments, ipython, igraph, kiwisolver, cycler, pyparsing, matplotlib, scipy, joblib, scikit-learn, patsy, statsmodels, mpmath, powerlaw, markov-clustering, fastcluster, camoco, camoco-cob Running setup.py install for bcolz ... error ERROR: Complete output from command /Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile: ERROR: SSE2 detected AVX2 detected running install running build running build_py creating build creating build/lib.macosx-10.7-x86_64-3.6 creating build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.macosx-10.7-x86_64-3.6 creating build/temp.macosx-10.7-x86_64-3.6/bcolz creating build/temp.macosx-10.7-x86_64-3.6/c-blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from bcolz/carray_ext.c:525: In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " ^ 1 warning generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ 3 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function] static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) { ^ c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function] static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function] static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function] static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function] static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function] static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found #include ^~~~~~~~~~~ 1 warning and 1 error generated. error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command "/Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Unable to install cob via pip on Mac OS X.
Error output:
Building wheels for collected packages: camoco, minus80, pyyaml, termcolor, powerlaw, bcolz, blaze, python-Levenshtein, mpmath, odo, psutil, sqlalchemy, toolz, backcall, datashape, googleapis-common-protos
Building wheel for camoco (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/77/fe/55/fe8c0899e7b68afcf0ba769c6878b2515e5f852074e8d091b3
Building wheel for minus80 (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/6e/07/99/895d82345142bb7295d5b814fdd28965e44db162444ed17e7c
Building wheel for pyyaml (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/16/27/a1/775c62ddea7bfa62324fd1f65847ed31c55dadb6051481ba3f
Building wheel for termcolor (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/7c/06/54/bc84598ba1daf8f970247f550b175aaaee85f68b4b0c5ab2c6
Building wheel for powerlaw (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/e0/27/02/08d0e2865072bfd8d7c655e290521e3feca3fc22f1ac460601
Building wheel for bcolz (setup.py) ... error
ERROR: Complete output from command /Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-wheel-le_2qmvm --python-tag cp36:
ERROR: SSE2 detected
AVX2 detected
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
ERROR: Failed building wheel for bcolz
Running setup.py clean for bcolz
Building wheel for blaze (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/ee/d1/16/1011f12ce541cb352c69c6edbb81ef18020ecbcc4324d52113
Building wheel for python-Levenshtein (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/de/c2/93/660fd5f7559049268ad2dc6d81c4e39e9e36518766eaf7e342
Building wheel for mpmath (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/63/9d/8e/37c3f6506ed3f152733a699e92d8e0c9f5e5f01dea262f80ad
Building wheel for odo (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/69/70/59/7963b5d20822afab8bd57898162a92d88f73ac5d5a21268db6
Building wheel for psutil (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/90/7e/74/bb640d77775e6b6a78bcc3120f9fea4d2a28b2706de1cff37d
Building wheel for sqlalchemy (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/74/97/23789e1e541fb3d64dc9a921a676539695b3d184cf77f5b009
Building wheel for toolz (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/0c/f6/ce6b2d1aa459ee97cc3c0f82236302bd62d89c86c700219463
Building wheel for backcall (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/98/b0/dd/29e28ff615af3dda4c67cab719dd51357597eabff926976b45
Building wheel for datashape (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/8d/06/05/c1cba3d57bdcfd3960e3f60a9fdc97e4baef2ef09af0ad1ef8
Building wheel for googleapis-common-protos (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/9e/3d/a2/1bec8bb7db80ab3216dbc33092bb7ccd0debfb8ba42b5668d5
Successfully built camoco minus80 pyyaml termcolor powerlaw blaze python-Levenshtein mpmath odo psutil sqlalchemy toolz backcall datashape googleapis-common-protos
Failed to build bcolz
Installing collected packages: click, itsdangerous, Werkzeug, MarkupSafe, Jinja2, flask, gunicorn, google-cloud, six, google-resumable-media, urllib3, idna, chardet, requests, protobuf, googleapis-common-protos, pyasn1, rsa, cachetools, pyasn1-modules, google-auth, pytz, google-api-core, google-cloud-core, google-cloud-storage, python-dateutil, pandas, bcolz, flask-cors, multipledispatch, datashape, toolz, decorator, networkx, odo, psutil, sqlalchemy, blaze, termcolor, pyyaml, asn1crypto, pycparser, cffi, cryptography, asyncssh, docutils, jmespath, botocore, s3transfer, boto3, fuzzywuzzy, python-Levenshtein, tqdm, backoff, minus80, cython, ipython-genutils, traitlets, backcall, appnope, pickleshare, ptyprocess, pexpect, parso, jedi, wcwidth, prompt-toolkit, pygments, ipython, igraph, kiwisolver, cycler, pyparsing, matplotlib, scipy, joblib, scikit-learn, patsy, statsmodels, mpmath, powerlaw, markov-clustering, fastcluster, camoco, camoco-cob
Running setup.py install for bcolz ... error
ERROR: Complete output from command /Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile:
ERROR: SSE2 detected
AVX2 detected
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command "/Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/
The text was updated successfully, but these errors were encountered: